BAC Information

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BAC

Clone NameMSMg01-186E17
Chromosome16 (Build37)
Map Location 57,400,272 - 57,400,584
singlet/doubletsinglet
Overlap gene2610528E23Rik, 4631422O05Rik
Upstream geneAbi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c
Downstream geneCol8a1, LOC435480, LOC629342, LOC100043477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186E17.T7 (MSMg01no186_e17.b1)MSMg01-186E17.TJ (MSMg01no186_e17.g1)
ACCAG378021AG378022
length789786
length of high quality
(start - end)
317 (46 - 362)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no186_e17.b1 PHD_FILE: MSMg01no186_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:14 2005CHROMAT_FILE: MSMg01no186_e17.g1 PHD_FILE: MSMg01no186_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAGAGCACTAAAGTGTTTTGTTTATGTGGGCAGTCATTTGCCAT
GTGGTGAGATTAAAAACAGACTAAACAAATGTTTTGGTAATGTCGTGGGT
AGTGGTGATTAAAGCAAGAAACATGTGAAGCTGCCTGTTAGCCACCCGGG
GTCCAGTTGGAATTCTGAAGTCCTGGGGTACACTGGCCAGGTTACTTTAT
GACCACCTTCATAGACAGTTATCTTATTTACTCCAAGGAGAGTCTGCTTG
AAGAGACTGTTTTCTTTCTTCAGAAAAACACATGAAAAATACGTGTCCCA
AATAGACTTGCTCTTTTTTTTCTCCCCCCCCCCCCCAGCAAGCGTGGAGT
CTAACTCCCCCTCACCCCCCCCCCCAAAAAAAAAACAGAATATGGGAGCC
GCGCAGCCAGAGTCTGTCTGTGTTTCCTGATCTCATCTATGATTTGCTTA
AAATCCTTGTGATCCCATTTTGTACTCTTAACGGTTCCCATCTCTCACAC
TTAATTCACTGTCCCTCCCTTATTTTTTTTGCTATCTTTCTTTCTTTCTA
CCTTTTTTACATTATCCCTTATTTATCACTCTATTTCTTTCACCCCTTCC
CGACCTGGTACCTCTCACTTGCTTTTTCTCCTCCAAATTCTATTCATCTT
CCTTTCCTTTCCCTCATTTACATCACTAATACAATCATCCCTGCCCTCTC
CCTCATCTGTTGTTTATACATTCTTATATCATAAATTTA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGACTGGGAG
GAAGAAGCAGCTCATTATGAGAAAAAAGGGTACCAGCCAGGTAAAGTGCT
AGCTAATCAGTTAAGGAAGCCAAAAGCGGCTGGCGAAGGCCAGTTTGCTG
ATTGGCCTCAGGGCAGTCGGCTTCAAGGTCCGCCCTATGCGGAGTCCCCG
CCCTGCGTAGTGCGTCAGCCCTGCGCAGAGAGACAATGCGCAGAGAGGCA
ATGCGCAGACTCATTCATTCCCAGAGAGGAACAAAGGAAAATACAACAGG
CATTTCCAGTCTTTGTTTTATTCCACCCCGCCCGCGTCCACGCTCCGGTA
GAATACGTACAGATTCCCCCCCTTTCCGAAAAAAACCGTAAATACGGAAC
CGATGCTAATTTTACCTTGGTGCAGTTAGACAGGCTCGCCGGCATAGCAC
TAACTCCTGCCGATTGGCATACGGTTGTAAAATTCGCTCTCCCTAGTTCG
GTCATTTATATGGAAATGTACATTTTTCCGTTCCTTACCTTGATACTTCT
TATTCATTACCATCTCTTTTTTTTTGTACTCCCCTATCTAAAACATACTT
TTATTAAGAACTCTATTTCATTCTCCGTCCTTTTTATCCTTTCTTTTTCC
TTCCTTCATTCGTTTCTTTTTCTAATATTTTTTTTTCCCTTTCCTCCCCC
TTTAATTTTGATATTTCNTACCCCTCGCCTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_e17.b1 MSMg01no186_e17.b1 CHROMAT_FILE:
MSMg01no186_e17.b1 PHD_FILE: MSMg01no186_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:14 2005
         (317 letters)



>mm_chr16_57400068_57400784
          Length = 717

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatagagcactaaagtgttttgtttatgtgggcagtcatttgccatgtggtgaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattcatagagcactaaagtgttttgtttatgtgggcagtcatttgccatgtggtgaga 458

                                                                       
Query: 65  ttaaaaacagactaaacaaatgttttggtaatgtcgtgggtagtggtgattaaagcaaga 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttaaaaacagactaaataaatgttttggtaatgtcgtgggtagtggtgattaaagcaaga 398

                                                                       
Query: 125 aacatgtgaagctgcctgttagccacccggggtccagttggaattctgaagtcctggggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aacatgtgaagctgcctgttagccacccggggtccagttggaattctgaagtcctggggt 338

                                                                       
Query: 185 acactggccaggttactttatgaccaccttcatagacagttatcttatttactccaagga 244
           |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 337 acactggccaggttactttatgactaccttcatagaccgttatcttatttactccaagga 278

                                                                       
Query: 245 gagtctgcttgaagagactgttttctttcttcagaaaaacacatgaaaaatacgtgtccc 304
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gagtctgcttcaagagactgttttctttcttcagaaaaacacatgaaaaatacgtgtccc 218

                        
Query: 305 aaatagacttgct 317
           |||||||||||||
Sbjct: 217 aaatagacttgct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)