BAC Information

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BAC

Clone NameMSMg01-187B17
Chromosome16 (Build37)
Map Location 49,997,086 - 49,997,374
singlet/doubletsinglet
Overlap genenone
Upstream geneC330027C09Rik, Myh15, 1700026J12Rik, LOC386061, EG216818, LOC628903, Ift57, LOC667796, LOC100043767, Cd47, EG433024, LOC100043769, LOC628951
Downstream geneEG224180, EG667802, LOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187B17.T7 (MSMg01no187_b17.b1)MSMg01-187B17.TJ (MSMg01no187_b17.g1)
ACCAG378578AG378579
length785740
length of high quality
(start - end)
250 (75 - 324)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no187_b17.b1 PHD_FILE: MSMg01no187_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:19 2005CHROMAT_FILE: MSMg01no187_b17.g1 PHD_FILE: MSMg01no187_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGG
AATTCATGCCCCTGTGCCATGATAGGGCATCTATTCCCAAGGGTGGTATA
GCTTTATCTTCAGATAGATCTATTCCCAATTTTCTGAGGAACCTCCAGAT
TAATTTCCAGAGTAGTTGTACCAGTCTGCAATCCCACCTGCAATGGAGGC
GTGTTCCTCTATACAGTCCACAAGACTCAAAAATCTCAACAAGATGAAGT
GCCCAAGTGAGGATGCCTCAGTCCCACTTGGGAGAGAGAAGAAAGCAATC
ACAAGTGAGGAGGGACCTGGGAGGGATAGTGGATGGAGTTGTTTTCTTTT
CTTCCCCCTCTTTTTTTTTTTTTTCCCCCCTTAATACAAATTTTACTTAT
TATATTTTTTAAAAACCCCCACCTTTTAATAATATTTAAACCACTTTTTT
TCACCCTTTTTTTCTTCCAATATTTTACTCCATCATATCCTTTTTTTTCT
TCCATTCCTTCCCTTCCTTTTTTTCCCCTTTTTTCCCCCTTTTTACTTCC
CTCACTTTCCTTCCTTTTCCTTCCTCCTTCATTATATTTTACACTCTTTT
TTTTTTTCCACCTTTTACCTCCCTTTCCACCCTTTCCTCCATTTTCCTTT
TTCCCACCACCTTTTTTCTTTTCTTTCCCCCTTTTCCTTCCCCCCCCCTT
TTCTCCTCTCACTTTTACACTCTTTTTTTTCCCCTTTTCCTTCTCCACTT
TTTCCTTTTTACCTCATTCCTTAACATTTTCCTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACATTTGGTTTGGCCGCATGCCTGG
GTTTGAGTTGTAGGAAAATGTTCACCACATGGAAGACACTAGGAGTCACT
GTTCTTTGGAATAGAGCATAGAGGTCAGAAGGGGCCTTTCAAGGAGTGGG
GACATGCCAGACTAGATGGCAGTGCCTCGATACACATGTATGTAGACGCA
ATCTAGGCTTTCTTGCTAACAAGCGCATTCTGATCCAGTGGGTCTTGGCC
TGAATACAACCTTTCTAACAAGCTGCTGAATGATGCAGGAGCTGCTGATC
TGTGGCTCACTATGTTTTCACCGCCCCCCCCCCCAATAACAGCATCTCCA
AGTTGGTGGCCTTTGCCCACCCCCAAATGTTAATGATAATAGCTTACATG
CGAAATGCAAACGACCAGAAACGAAGTCACAGAGAGAGCTATAGGGAAGG
CTGCAAGAGACTGCCAGCAAATACTATTCTGTTGGCTGCACCAGAAGGGC
TTAGTATAAGCAGAGACACTGGTGGGAAAGTGTCTGCCTTCAAGGTCCAA
TGAAAGACACAGACCACTCCTAGTCTGACGGTCTGGTGGAGCACCTGACT
CACGTCATGTGCAATACTATCTGGTTGGTGGCTCAGTCAGATTCCGTAAA
ATGTGTTCTAGGCTTTGAAATGTACCGAGATAGCGCTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_b17.g1 MSMg01no187_b17.g1 CHROMAT_FILE:
MSMg01no187_b17.g1 PHD_FILE: MSMg01no187_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:19 2005
         (290 letters)



>mm_chr16_49996990_49997679
          Length = 690

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatttggtttggccgcatgcctgggtttgagttgtaggaaaatgttcaccacatggaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acatttggtttggccgcatgcctgggtttgagttgtaggaaaatgttcaccacatggaag 326

                                                                       
Query: 61  acactaggagtcactgttctttggaatagagcatagaggtcagaaggggcctttcaagga 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 acactaggagtcactgttctttggaatagagcatagaggtcaggaggggcctttcaagga 266

                                                                       
Query: 121 gtggggacatgccagactagatggcagtgcctcgatacacatgtatgtagacgcaatcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtggggacatgccagactagatggcagtgcctcgatacacatgtatgtagacgcaatcta 206

                                                                       
Query: 181 ggctttcttgctaacaagcgcattctgatccagtgggtcttggcctgaatacaacctttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggctttcttgctaacaagcgcattctgatccagtgggtcttggcctgaatacaacctttc 146

                                                            
Query: 241 taacaagctgctgaatgatgcaggagctgctgatctgtggctcactatg 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 taacaagctgctgaatgatgcaggagctgctgatctgtggctcactatg 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)