BAC Information

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BAC

Clone NameMSMg01-188G13
Chromosome16 (Build37)
Map Location 27,795,094 - 27,795,373
singlet/doubletsinglet
Overlap genenone
Upstream geneGm606, Ostn, Uts2d, Ccdc50
Downstream geneFgf12
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188G13.T7 (MSMg01no188_g13.b1)MSMg01-188G13.TJ (MSMg01no188_g13.g1)
ACCAG379437AG379438
length750711
length of high quality
(start - end)
313 (398 - 710)287 (60 - 346)
definitionCHROMAT_FILE: MSMg01no188_g13.b1 PHD_FILE: MSMg01no188_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:03 2005CHROMAT_FILE: MSMg01no188_g13.g1 PHD_FILE: MSMg01no188_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCAGGGGGTCCAGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCAAGGCCCATACCGAAATGTGATAAAAGGAA
TCTACAGCAAACCAGTAGCCAACATCAAAGTATTTGGCCGAGAAGCTTGA
AGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCT
ACCTATTCAACATTGTACTTGAAGTCCTAGCAAGAGCAATTCAACAACAA
AAGGAGATCAAGGGGATACAAATGGCAAAGGAAGAAGTCAAAATATCACT
TTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCA
GAGAACTCCTAAGCCTGATAAACAGCTTCTTTTGAACCACGCTGCATATA
AAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAA
GCTGAGAGAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAA
TATAAAATACCTTGGCATGACTCTAACTAAGGAAGTGAAAGATCTGTATG
ATACTAACTTCAAGTCTCTGAAGAAAGAAATTTAAGAAGATCTCAGAAGA
TGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAAT
GGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAA
TTCCAACTCAATTCTTCAACGAATTAGAAAGAGCAATCTGCAAATTCATN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXAAAAAATTTAGGGTCATCAGAAGAATCTCTCCACTGCAACT
CCAAGACATTTTCTTCTGGAATGTACAAATAGGATCTCAGCAGGCAGACA
ACTAATAGGAAAATAAAAAAGCCCTTAGGCTAAAGGGAGATTGTTAAATT
AAACTAGATATGAGAAATGCATGGAGTGCAGATAGTGTGTGAATCTCAGT
GCTACTGAAGCGTGTAATAGGAAAGGGTATCAGATTCCCCACTCTGATTA
AGGATACTACTTTAAAAGACCATTATGTAAGCTTATATTTTCTTTGATGG
TGACCCCCCCCCACATTTCTTTAAAATGTGTGGAAATTAATGACTATAGA
ACAATTTCATATTTTGAAGACCCCTATGTGGGTTGAAGATCCTCGAGTAG
AAATGTGTTATACCCATGGCCCCTGCTGTTCTCTGGCTCTCCACATCTAT
CAAAAAAGGACTATGCTGCTGTGATTAGCATTTTATGCGCAAATAAAACA
TTCTCCTTGTATAACCAGACTGAAATAGAGAAGGAAGGCCCATGACAATG
CTTCCGTAAAGAAAATGCTTCTGTGCTCTTGGTCTGGTTCCAGACATTTC
TGCCCTTCCTCCCAAGACCCCGGGGACTCTTACGCCACTTAGCCCTGTCT
CCTAAGAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_g13.g1 MSMg01no188_g13.g1 CHROMAT_FILE:
MSMg01no188_g13.g1 PHD_FILE: MSMg01no188_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:03 2005
         (287 letters)



>mm_chr16_27794894_27795577
          Length = 684

 Score =  524 bits (271), Expect = e-153
 Identities = 279/283 (98%), Gaps = 3/283 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaaatttagggtcatcagaagaatctctccactgcaactccaagacattttcttctgg 60
           |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||
Sbjct: 480 aaaaaatttagggtcatcagaagaatctctccactgcaa---caagacattttcttctgg 424

                                                                       
Query: 61  aatgtacaaataggatctcagcaggcagacaactaataggaaaataaaaaagcccttagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 423 aatgtacaaataggatctcagcaggcagacaactaataggaaaataagaaagcccttagg 364

                                                                       
Query: 121 ctaaagggagattgttaaattaaactagatatgagaaatgcatggagtgcagatagtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctaaagggagattgttaaattaaactagatatgagaaatgcatggagtgcagatagtgtg 304

                                                                       
Query: 181 tgaatctcagtgctactgaagcgtgtaataggaaagggtatcagattccccactctgatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgaatctcagtgctactgaagcgtgtaataggaaagggtatcagattccccactctgatt 244

                                                      
Query: 241 aaggatactactttaaaagaccattatgtaagcttatattttc 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aaggatactactttaaaagaccattatgtaagcttatattttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 684
Length adjustment: 9
Effective length of query: 278
Effective length of database: 675
Effective search space:   187650
Effective search space used:   187650
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)