BAC Information

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BAC

Clone NameMSMg01-188N11
Chromosome16 (Build37)
Map Location 76,768,216 - 76,768,502
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1, LOC100039316
Downstream gene1700063K16Rik, LOC665120, Usp25, 2810055G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188N11.T7 (MSMg01no188_n11.b1)MSMg01-188N11.TJ (MSMg01no188_n11.g1)
ACCAG379726AG379727
length736730
length of high quality
(start - end)
314 (61 - 374)287 (78 - 364)
definitionCHROMAT_FILE: MSMg01no188_n11.b1 PHD_FILE: MSMg01no188_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:37 2005CHROMAT_FILE: MSMg01no188_n11.g1 PHD_FILE: MSMg01no188_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCCGATTTNTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCCTTGTGATCAGTTTTGAACAGCAGAGGTCA
GTGAGTAATTTCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTTTTGGTTTTTCGAGACAGAGTTTCTCTGTGTAGCC
CTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGA
AATCCTCCTGCCTCTGCCTCCCAAGTGCTGGCATTAAAGGTGTGTGCCAC
CACTGCCCTGCCAGTGAGTAATTTTTTGTTAGGCCCACCCACTCAAAGTG
GATGAGCCCTAAGAGTCGGGAGAGTGTGAATGGAAATAGGAATGAGAGTT
GAACCAAGGCAGAGGGCAGTGCAGTGGCCTGTAGCTACCTAGACATAAAA
TGGATTTCATAGTAGGATAGTAGGTAGTGATCACTAGGAACCTTGCTAGC
AGGATGGAAATAAGATTTCAGAAAGTGGTAAGCAAACCATGTCAAAACTA
CAGGAAGTCTGATCTGCACGCATATTCTATCTGTATAACTCATCGTAATA
GACAGAGATATGATATCTGAAAACTCTGCTTAATGCCTAAGTATCAGGAG
CTATAGCCAGTGGTACAATATTGTGTGCTATGTTAA
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATTTCTTTGAGTCCAGGGCCTT
GGCTAGCTTTGCTTACTTTTCACTCTTAATTTCAATCTCAGTTGTGTGGA
AACACCAGTCTCCATTTATATTTGGGGAGGGGGATAGTTCATAGATGATC
ATCAGAACTAGAAATGAAACATGAAAAAGAGAAGGAGAAAATTTGAGAAG
AATTCGTTACAAATCTGCATAAAGACGTTTTCCCTTACACCTTTAGAAAC
GCTCTCAATTGTCAAGGGATCTCTTACAGAGTACTACATAGACAAATACC
CTTTGTCTTCTTGTGTATTATGTTGAAAGGCATTACCCAAGGTCTCTCTC
CATTGCTTTAATGGAAAGGCTATGTGGAGAGCATTCATTTTTCCCCCTCT
GATTCACCTTCAGCTCCCCTACTTTGGAATGAGAAGTGGCCATTTTCAGG
ACTTGAGTTTAAAATAGGTCATTTCCCTCTTGCTTAGTCAGAGGAGCCTG
GCTTCCTTAAATCGAGTGACTAGGTTTGTTCACGAAGTCCTTTTATGCAA
TGTATCTGAGTTCCAAACTACAGCTTATCCTTACTGCTTTTATAATCAAA
TCTTGAATTGTAAATGGCGTACGTTTTCTAGTAAGTGCTGGGAAACACCC
TTAGAGTAATTAAATCCTGTGGATCATCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_n11.g1 MSMg01no188_n11.g1 CHROMAT_FILE:
MSMg01no188_n11.g1 PHD_FILE: MSMg01no188_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:37 2005
         (287 letters)



>mm_chr16_76768016_76768702
          Length = 687

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttctttgagtccagggccttggctagctttgcttacttttcactcttaatttcaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 487 catttctttgagtccagggccttggctagctttgcttacttttcacttttaatttcaatc 428

                                                                       
Query: 61  tcagttgtgtggaaacaccagtctccatttatatttggggagggggatagttcatagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tcagttgtgtggaaacaccagtctccatttatatttggggagggggatagttcatagatg 368

                                                                       
Query: 121 atcatcagaactagaaatgaaacatgaaaaagagaaggagaaaatttgagaagaattcgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 atcatcagaactagaaatgaaacatgaaaaagagaaggagaaaatttgagaagaattcgt 308

                                                                       
Query: 181 tacaaatctgcataaagacgttttcccttacacctttagaaacgctctcaattgtcaagg 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tacaaatctgcataaagacattttcccttacacctttagaaacgctctcaattgtcaagg 248

                                                          
Query: 241 gatctcttacagagtactacatagacaaataccctttgtcttcttgt 287
           |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 247 gatctcttacagagcactacatagacaaataccctttgtcttcttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)