Query= MSMg01no189_m05.b1 MSMg01no189_m05.b1 CHROMAT_FILE:
MSMg01no189_m05.b1 PHD_FILE: MSMg01no189_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:49 2005
(314 letters)
>mm_chr16_28054963_28055676
Length = 714
Score = 530 bits (274), Expect = e-155
Identities = 301/310 (97%)
Strand = Plus / Plus
Query: 5 gaattcattttcttcatcctctacatcttgcttacgtcattgataactctatggaagtct 64
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 205 gaattcattttcttcatcctctacatcttgcttacatcattgatagctctatggaagtct 264
Query: 65 cacctagacagagctccagcaatgaaacccatatattacattgctatagctatgcataga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacctagacagagctccagcaatgaaacccatatattacattgctatagctatgcataga 324
Query: 125 ctcagtctttacatagcaagagatgtatggtatacctttaggtcacacatgagtgtctct 184
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcagtcattacatagcaagagatgtatggtatacctttaggtcacacatgagtgtctct 384
Query: 185 ctgtgtctaacctaatcggcaactatcatgagtccaccctcatttattctttatccatgt 244
|||||||||||||||| | ||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 385 ctgtgtctaacctaattgacaactatcatgagtccatcctcatttattctttatacatgt 444
Query: 245 gcccaccaagaaagtcatatttaaataataaatttctgaagtggggtctttaagggttct 304
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acccaccaagaaagttatatttaaataataaatttctgaagtggggtctttaagggttct 504
Query: 305 ttggaaagtc 314
||||||||||
Sbjct: 505 ttggaaagtc 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_m05.g1 MSMg01no189_m05.g1 CHROMAT_FILE:
MSMg01no189_m05.g1 PHD_FILE: MSMg01no189_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:49 2005
(601 letters)
>mm_chr16_28141214_28142215
Length = 1002
Score = 1079 bits (558), Expect = 0.0
Identities = 591/602 (98%), Gaps = 1/602 (0%)
Strand = Plus / Minus
Query: 1 cagattatccacttggtatttatattttctgtttttatagcacactttccccggcccctt 60
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 657 cagattatccacttggtatttatgttttctgtttttatagcacactttccatggcccctt 598
Query: 61 tgttttcaggagtcaacttctaaaccacatggtttcttactgcatcctggaca-tttgaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 597 tgttttcaggagtcaacttctaaaccacatggtttcttactgcatcctggacattttgaa 538
Query: 120 tgtcccatggtcttatggatctctgtatcgtctttaaatataaaacagaaggttaatatt 179
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 537 tgtcccatggtcttatggatctctgtatcatctttaaatataaaacagaaggttaatatt 478
Query: 180 ttgatgccatgaatattcaactagatgggttcacacaggagtttcgaatgcctttcctat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ttgatgccatgaatattcaactagatgggttcacacaggagtttcgaatgcctttcctat 418
Query: 240 aatgtggccactttaccagaatagttgtcaaagcagttacagtaatgcacatgatccttg 299
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 417 aatgtggccactttaccagaatagttgtcaaggcagttacagtaatgcacatgatccttg 358
Query: 300 acttataatgaatgattacatttagaaactttcagctttatgattgtgtgaatgcatgca 359
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 acttataatgaatgattacgtttagaaactttcagctttatgattgtgtgaatgcatgca 298
Query: 360 tatgcatgctgtatatcaaaaatttcacccttttcctgagccagtggtatgttcctgtca 419
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 297 tatgcatgctgtatatcaaaaatttcacccttttcctgagccagtgatatgttcctgtca 238
Query: 420 aacacaaatgaccaatgctacttatgaattatgtttttaagtaatggcacttggtatgct 479
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 aacacaaataaccaatgctacttatgaattatgtttttaagtaatggcacttggtatgct 178
Query: 480 aggtgtttaatgtgtatttttcaatttatgatgttttcaacataaaatgaatgagtttat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 177 aggtgtttaatgtgtatttttcaatttatgatgttttcaacataaaatgaatgggtttat 118
Query: 540 aaatccatcagaagtccttgaggggctcttccgaatgtggtcagtctctgagccacctag 599
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 117 aaatccatcagaagtccttgaggggctcttctgaatgtggtcagtctctgagccacctag 58
Query: 600 tg 601
||
Sbjct: 57 tg 56
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1002
Length adjustment: 10
Effective length of query: 591
Effective length of database: 992
Effective search space: 586272
Effective search space used: 586272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
