BAC Information

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BAC

Clone NameMSMg01-190D19
Chromosome16 (Build37)
Map Location 83,358,295 - 83,358,575
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665260
Downstream geneEG545172, LOC100039572, EG621729, LOC640489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190D19.T7 (MSMg01no190_d19.b1)MSMg01-190D19.TJ (MSMg01no190_d19.g1)
ACCAG380651AG380652
length692730
length of high quality
(start - end)		321 (46 - 366)282 (58 - 339)
definitionCHROMAT_FILE: MSMg01no190_d19.b1 PHD_FILE: MSMg01no190_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:25 2005CHROMAT_FILE: MSMg01no190_d19.g1 PHD_FILE: MSMg01no190_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:25 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAATAATTTAGAGGGTAGATATCTGCCCAATTCCAGTGTAATAAT
GGTCTACTATAAAGATAAAGGTTTTATGTCTTTTATTTTGGAACTGAACA
AACAAATGTAGGTTAGGAGCCCCCAATGGAGACTACATATTATTACATTT
ATATTGTTTTTGTTGTCCAGCTTTAATCCATGGTCGTCTTATAAAATACA
AGGGATTATATCAATTTTCTCATATGTATTAGGACTTTCTTTGTGACTTG
GTATATTATCAATTTTGGAGATGGTTCTGTGAGTTGCTGAGATGAAGGTA
TATTGCTTTGTGTTTCGCCGCACAGGTTCTGTATTAATCTGATTGGTCCA
CTTGAGTCATAACATCTATTAGTTCCATTACTTCATCCAGAATGGGAAGG
ATCTTACTATTGTCTACAAGCTGTGGGTTGGGGTCTTATCTGGGGCTCAA
ACCACTAAATTGGCAGAGCAAAGAAAACACCGTAATTCAAATAAAATTCT
ATATGTTGGATTACTGGAATGGTTTGCACCATGAAAGAGAAAACTCTAAA
CTCAGTTACTACATTCTACTAAAATAAGAAACAAGATAAGAAATCAACTG
AATATAATTGTCCATTTTACATTAGGAAGGTCTTATGAATCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATTTCAAATCCAGTTGTTCCCTTCCCGCAACACACTCTGTTAG
CCCCTGGGGCCAACACATTCACCACAGCAGCCCTCATGGACAGACATGGG
CTTGTGGAGCCTGATACCAACAGCAAGGAACAGCAAAAAATTATACACCC
ATAGGTCCTGTCTATTCTCAGGGGACGGTGCAGATGAGTATAGGTAATTC
CTTCTAGCACCTACTTATAACTTACACTTAAAACTACTTCATCTTTAAAG
ATTTTTTTCACATCATTGTCTAGATGCTACAGAAACTAATTTAATGGATC
CCCCAAACGATCCCCAATTTAGCATCCCCTAATGATTTATGTATGGAATA
AATAACAAAAAAAACCAAATTGATCAAAGTGGAAGAGCAAGCTCTCCAGA
AACTAACTAAGTAGGTAACTGACTACTTAATCATCTGACTAACTAAATAA
CTACGTCAATGAATGAATGAATCAATGAATGAATGAATCGAACCATAAAC
CCGAAAATGGTTCTTTATCAAGGTTCTCATAAATGGGAATATAAAATTCT
AAATAATTTTGATCGGAAATATTAAAATTATTCCAAATCTAATTTCCAAC
ACATGAAACCTCCCTTTCTTCATCCCACTAAAACAAGACCTTTTCCTTTT
TGGGATAAAACAACAAAAAATTGTGCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_d19.g1 MSMg01no190_d19.g1 CHROMAT_FILE:
MSMg01no190_d19.g1 PHD_FILE: MSMg01no190_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:25 2005
         (282 letters)



>mm_chr16_83358095_83358775
          Length = 681

 Score =  514 bits (266), Expect = e-150
 Identities = 278/282 (98%), Gaps = 1/282 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcaaatccagttgttcccttcccgcaacacactctgttagcccctggggccaacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttcaaatccagttgttcccttcccgcaacacactctgttagcccctggggccaacaca 260

                                                                       
Query: 61  ttcaccacagcagccctcatggacagacatgggcttgtggagcctgataccaacagcaag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ttcaccacagcagccctcatggacagacatgggcttgtggagcctgataccaacagtaag 320

                                                                       
Query: 121 gaacagcaaaaaattatacacccataggtcctgtctattctcaggggacggtgcagatga 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 gaacagcaaaaaattatacacccataggtcctgtctattctcaggggatggtgcagatga 380

                                                                       
Query: 181 gtataggtaattccttctagcacctacttataacttacacttaaaactacttcatcttta 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtataggtaattccttctagaacctacttataacttacacttaaaactacttcatcttta 440

                                                     
Query: 241 aagatttttttcacatcattgtctagatgctacagaaactaa 282
           |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 aagatttttt-cacatcattgtctagatgctacagaaactaa 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 681
Length adjustment: 9
Effective length of query: 273
Effective length of database: 672
Effective search space:   183456
Effective search space used:   183456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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