BAC Information

Click to search

BAC

Clone NameMSMg01-190J01
Chromosome16 (Build37)
Map Location 30,424,023 - 30,424,310
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp13a4, Opa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3
Downstream geneTmem44, Lsg1, BC022623, LOC100043122, AI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190J01.T7 (MSMg01no190_j01.b1)MSMg01-190J01.TJ (MSMg01no190_j01.g1)
ACCAG380870AG380871
length703765
length of high quality
(start - end)
96 (372 - 467)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no190_j01.b1 PHD_FILE: MSMg01no190_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:51 2005CHROMAT_FILE: MSMg01no190_j01.g1 PHD_FILE: MSMg01no190_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAG
GAGGTCCCAACTCAAAACAGTCTTAGTTTTTCTATAAGCCAGGCTTCTGG
CTTCAGTGGAGGAGGAAAGGGTGGTCCAGGCAGCATAATAAGACGAAGGA
CACGAAAGGACCAGGTGGCTTCAGGGGGCTGAGAGGAAATGGGGCAGCTG
TGAGCTCTGGAGCAAAAGAATGGGGTGGGGGACACCATAAACAGGAGCGA
AGCTGGAACTGGGGAAGGCTGTTGTGGGAGACAGCGAGCTGGAACAGCTA
ACAGAATCCCAAGGGCCTTAGACACCTGGCAGGTGACGATGGAATGGTGT
CATTCATTTAATCCCACCCCCACTCCCTGGCCCATCTCTCTAGAGCAGAG
GGTCTCAACCTGTGGGTCTCGACCCCACTGGAGGGTCACATATCTGATAT
TTACGTTACAATTTGTAATCGCAGTGTATGAAGTAGTCATGAAGGAATTT
TATGGGCGTGTGTGTGTGTCGGATTTAGGCCCCAATCTCTCCTATAGAAT
AGCGCACCCAGGACAAATGACGATCAGAACAACCCCTCCCCAGTCCCCAC
TCCCCCCCCCACATAACACCCACCCCCTGCTTACGTACACAATCCGCCAC
TGGTAATACTGGGCACAGGCCAGCGAAGAGTTTGTTTACCGGCGCAAAAG
GCN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGGTGGAGTGGAAGGTGTGCACAG
AGACAGGCATGTAAAAGCAAAGTGTAATTTCAGAAGAGGGGAGGGGCAGT
CAGAGGCAACTAGAAGACAGAAGGAAGTTGGAAAGAACCCATGAACAGGA
TATGGCTGTTCTCATGCCTGCCCACCACACAGGTAGACTCGTGTGTGCGT
GCATGCAACACACACACACACACACACTCACACATGCACATACATATACA
CACACGCACACACTCACACATGCACACACACATGAGAGAAAGAGACAGAC
AAGCAGAGACAGAGACAGATTTTTTTACCGCCCCCCCCCCCAGAATAATC
TAATCTTACATACTCTGTTAACGGTAGCACAAAATGAAATAAAACACTGG
GTATCTTGTAAGGGATAAAACCTTACTTTTTGAAGTTCTGGAGGTAGCCA
GTTTAACACGCAAGCACTGATAGGACGGGTTTCTGCCCACAGAACGTCTC
CCTGTTGTCGAGACCCTCACATGTCTAACGCTAAACCGCGAAGACAGGAC
CCCCCCCCCTACAAACCTAAACGGCACACTTGAGCGAAATCCACCACCGG
GCCAGCCTTCGTTCCAACTGAGCCGCAATTTACCACCCCCGCCGCCCCAC
AAAAGGACGCGCCTATCTCCGAACAGCCGAACGCTCATCAAACGCGCCCT
CCCAAGCTACCACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_j01.g1 MSMg01no190_j01.g1 CHROMAT_FILE:
MSMg01no190_j01.g1 PHD_FILE: MSMg01no190_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:51 2005
         (292 letters)



>mm_chr16_30423929_30424620
          Length = 692

 Score =  441 bits (228), Expect = e-128
 Identities = 274/296 (92%), Gaps = 12/296 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggtggagtggaaggtgtgcacagagacaggcatgtaaaagcaaagtgtaatttcagaa 60
           ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 382 atggtggagtggaaggtgtacacagagacgggcatgtaaaagcaaagtgtaatttcagaa 323

                                                                       
Query: 61  gaggggaggggcagtcagaggcaactagaagacagaaggaagttggaaagaacccatgaa 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaggggaggagcagtcagaggcaactagaagacagaaggaagttggaaagaacccatgaa 263

                                                                       
Query: 121 caggatatggctgttctcatgcctgcccaccacacaggtagactcgtgtgtgcgtgcatg 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||  ||| ||||||
Sbjct: 262 caggatatggctgttctcatgcctgcccaccacacaggtagacccgtgcatgcatgcatg 203

                                                                       
Query: 181 caacacacacacacacacacactcacacatgcacatacatatacacacacgcacacactc 240
           ||||||||||||||        ||||||||||||| ||||||||||||| ||||||||||
Sbjct: 202 caacacacacacac--------tcacacatgcacacacatatacacacatgcacacactc 151

                                                                   
Query: 241 ac----acatgcacacacacatgagagaaagagacagacaagcagagacagagaca 292
           ||    |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 150 actcacacatgcacacacacatgagagagagagacagacaagcagagacagagaca 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)