BAC Information

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BAC

Clone NameMSMg01-191G19
Chromosome16 (Build37)
Map Location 6,057,019 - 6,057,296
singlet/doubletsinglet
Overlap geneA2bp1
Upstream geneUbn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik, LOC100042436, LOC100042445
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191G19.T7 (MSMg01no191_g19.b1)MSMg01-191G19.TJ (MSMg01no191_g19.g1)
ACCAG381444AG381445
length812702
length of high quality
(start - end)
61 (43 - 103)282 (76 - 357)
definitionCHROMAT_FILE: MSMg01no191_g19.b1 PHD_FILE: MSMg01no191_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:01 2005CHROMAT_FILE: MSMg01no191_g19.g1 PHD_FILE: MSMg01no191_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTAAGCAGAAGCCACCCTTAATCAACTAATATATGTGCAGCTACAGAGC
CTGTCCTCGTCCAGCGGGAGAATCCACACTGCAACCCTCCTCCTCCTCCT
CCTCCTCCACCACCTCCTCCACCTCATAAAACTCACTAAAAACCACAATA
TACTCGTCATGCACGAAATATTCAAAAAAATAACTCAAACTAAAAATAAT
AAAATAAATTAAATAAAAAAAAAAAAAAAAAACATAAAAAATGATGTCAA
CAACCAAAAATAAAAAAATTTTTTTAAAACTAGAAAAAATTAAAAATAAA
AAAAAAAGAAATATATTTTTTTTACCCACACCCCACCCCCGAGAATAAAA
TCTAGTACTATTTGTTGATAGGGTTTGAAAATTTCAAAAAAAAAAAAAAA
CATAATTGTGCAGGGGTGAAAAATAAAAAATAAGTCCAATGTAAAGTAAA
GATCAACAGAAAAGATTTTAAAAGATAAAACACACTCCGATAAATCAAAT
ACACTATTAATACCGGGTCATAGACTCGAATGGTAGTTTGGCACGAAGAT
GTGACAGGATGAAGGCTGATATGTGACACGACGTGAACAATACAGATCAT
AAAGTATAAGATACGAATTTAAAAGAAAATGAAAAATAGCCGAAACCATC
ACAATAGAGAGAATGATAAAAGTGTACCACATAGCATAAATGAGGGAATA
TAAGCAATGAAGTGACGTTAAACCTTGCATTATTAATCGCATAACTGATG
CGGCGCATCACN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTATGTAGCTGAGATAGCTTTGAA
AACTGTAGTCCACATGGCTCAGCCTCCCAAGTGCTGGGATGTACTTGGCT
GCACACCACTAAGCCCAGTTTTAACTACCGCATGGAAATGGCATCATGTA
ATATTTGCCTTTCATACCTGTCCATATTGATTAAAAAGGTCATCTTCCCT
TTTTAATGCTAAGTTACTTCCTGAGTTGTGACAGGACCACACATTCAAAA
GTATTGCTGAAAATGTCAGGGATCTATGTTTGGGAGGATTCATATTTGGT
GTATAATATTCTACAACCCTCCACGAAGCTTCAAAACAGATTAGGCACTT
GGAATAAGTACATCAAATCCCAAACATAAAATCTGTCTAACTAACCAAAG
CCTACAAAGGCACTATTTGTGGGTATAAGTGTTTCATGGAGCCATTTGAG
CTGACCAGAGGAAAGTGTGATGGTAGTGACAGGGTTGAGAAGCATATGAC
ATCTGAGGCTAATTTCCAGGCACAGCTACCATGTCCCTAAAATGAACCAT
TCAGAGACAAAGAAAAGGTGACCAAGTTGAGATAGTTTCAAATGCATGCA
ATCAGACAGGGTTGATTTCTTTATGATGCTGTTAATTAAGTTGGATGGCC
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_g19.g1 MSMg01no191_g19.g1 CHROMAT_FILE:
MSMg01no191_g19.g1 PHD_FILE: MSMg01no191_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:01 2005
         (282 letters)



>mm_chr16_6056819_6057500
          Length = 682

 Score =  538 bits (278), Expect = e-157
 Identities = 278/278 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtatgtagctgagatagctttgaaaactgtagtccacatggctcagcctcccaagtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtatgtagctgagatagctttgaaaactgtagtccacatggctcagcctcccaagtgct 260

                                                                       
Query: 61  gggatgtacttggctgcacaccactaagcccagttttaactaccgcatggaaatggcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggatgtacttggctgcacaccactaagcccagttttaactaccgcatggaaatggcatc 320

                                                                       
Query: 121 atgtaatatttgcctttcatacctgtccatattgattaaaaaggtcatcttcccttttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtaatatttgcctttcatacctgtccatattgattaaaaaggtcatcttcccttttta 380

                                                                       
Query: 181 atgctaagttacttcctgagttgtgacaggaccacacattcaaaagtattgctgaaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgctaagttacttcctgagttgtgacaggaccacacattcaaaagtattgctgaaaatg 440

                                                 
Query: 241 tcagggatctatgtttgggaggattcatatttggtgta 278
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagggatctatgtttgggaggattcatatttggtgta 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)