BAC Information

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BAC

Clone NameMSMg01-192E04
Chromosome16 (Build37)
Map Location 82,315,670 - 82,316,081
singlet/doubletsinglet
Overlap genenone
Upstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
Downstream geneEG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192E04.T7 (MSMg01no192_e04.b1)MSMg01-192E04.TJ (MSMg01no192_e04.g1)
ACCAG381998AG381999
length1,2691,253
length of high quality
(start - end)
416 (41 - 456)389 (70 - 458)
definitionCHROMAT_FILE: MSMg01no192_e04.b1 PHD_FILE: MSMg01no192_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:23 2005CHROMAT_FILE: MSMg01no192_e04.g1 PHD_FILE: MSMg01no192_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTACAGTGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTCTTCTTGTTGCATCTATTCTATTTTGAATAGAAGAAATCTTTTTCAGA
TATCTGTAAAGACGTGTGCTAGCTGAAAAGTGTATCTAGGGCATGTCAAA
AATCATGACAGACTTCTGTATGAAGATATTGATTAAGTATAGTTAGTTCT
ACTTAAAAATACAAAGTTTAAAGAGGTTTTTAATTATTCACCTAAAACTA
TTCATTTATCTGATAAAATAACATAGCTCTCTCCTTAAATTTTGAAATGT
AGATTTCCTTTGGTCATTTTTCTCAATGTCCATTTAACTGGTGAAAAAAT
AATGCTTGTGTCATTCAATGTCAACATAATTTCAGACATTTTAGATATAG
ATGTTTGTTTGACATCTGGTTGCCAGTGGAAATTTCTTATGAAATCAAAT
TTTATGCTTTCCCCCCCACCATGTATTCAATGTTTCTTTACAAAATTACA
CTGTGTTCTTAACACCTGTGTACTAAACAAAATGTGATCCCTTCCCAGAG
AATTCTTCATTTTAAATATTGTAATCTATGTTAATATATATATATATAAA
ATATATAATATATAATTATACACATAATTATATAATATATAATATATAAT
ATATAATATATAATATATAATATACAATATATAATATATAATATATAATA
TATAATATATAATATATAATATATAATATATAATATAATATACTATACTA
TATACTATATACTATATACTATATACTATATACTATATACTATATACTAT
ATACTATATACTATATACTATATACTATATACTATATACTATATACTATA
TACTATATACCTATATACTATATACTATATACTATATACTATATACTATA
TACTTATATACTATATACTATATACTATATACTATATACTATTATCTATA
TCNAAATTCTATTTCCTATATACTATATACCATTTTCCATTTACCTAATA
CTCATTTTCAATTTATCATTTTTCCCTATCCTTTTATACTTATTTTTATC
TTATAAATCTTCACTCCCTTATTTATTTCTTTTCCCTACACTATAATTAC
CTTTTTCCCTCTTCACTCTTTCTCTTCTCTTTCTTCTCTTTTTTCCCCTC
TATCTCTCATTCCATCCTATTCCTTACTCTTTATTTCTATTTATTTCCTC
TTTTACTACAACTCTCTCTCTCTTTATTTTNCCATTCTCTTCTTCATACT
CTTATATTTCTTATCTTTA
NNNCCAAGAAGGTANCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAACATTATGGGCTGACCTGTTTTCTGTCTGA
TCACTTCAGAATGAGACTTTTATTTGGAAACAGAGCTTTTAAAGAGAAAT
TGAAAGTACAATCCTAAAACTTCCAATGTCTGGTGCCCTTATAAGAGGAG
ATGAGGATGCAGATGAGAAGACACAGATGGTGTTTCTTAAACGAAAGAGT
ATATCATCTTAGAAATATTACTTAGAAAATAAAAATAGCCAAAAGTAACT
CCCCTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGC
TGTCCGGAACTCACTTTGTAGACCAGGCTGGCTTCGAACTCAAAAATCTG
TTTGCCTTTGCCTCCAGAGTGCTGGGATTAAAAAGGCGTGTGCCACCTTT
TTTTTTTCCCCCCCCCCCNANAATAATGCCCCCTCCAAAAAAAAGGGGGG
GCTGGCCCCNAATCTGCCTTACAGTAGCATCTATAATAGCCTCTTTACAA
ATCAAGTCCCACATGTATATTTATATTTTTTTCTCTTGGTCTTACTTGAA
ATAATTGGGGGACAATAGTATTTATGATGTCGGGTTTAATATATAGATTA
TTTTCTCTTGAATTTTTAGTTTTTTTATGCTACCTTGTCCTTTTTTCCCC
TTCCTTATGACGATAATTATTATTACTCCGATTTTACCTGTTTTTCTTAA
TTTTCTTTCTTAAATACATTTATTTTCTTTTTATTCCTCTTTTTTTTCTT
TCCATCCCTCTCTTATCTATTATCTTCATCTCAATATTTTTTCTTCTCAT
TCTTATTTCTTTCTTTAATACTCACTCTTTCTTTTCCTTATAATATCCCT
TATTCTCTCCCTTTTATTTTCTTCTTCTCTCTTTCCTCTTTATTCTACTC
TCTTTTCTTATTTTCTCTTCTTTAACTCTATTTTCCTTATTTTTTTTTTT
CTCTTTCTTTCTCCTTCCTTCCTCTTCTTCTCTTCCTTTTTTACTTCTTA
TCTTCTATTTTCATTTCTTCTCTTATTATATTATATTATCCTTTTTTTAA
TTCTTATTTTACTTTCATCCTTCTCACTATCTCTTCTTTTTTTATTCAAT
TTATATATTCTTAATTCCTATTATTTTATTTTACTTTCTTTCTACATTCT
TATCTCTCATCTCTACTTCTTTATTTTCTTATCATAATATTCTACTATTC
TTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_e04.b1 MSMg01no192_e04.b1 CHROMAT_FILE:
MSMg01no192_e04.b1 PHD_FILE: MSMg01no192_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:23 2005
         (416 letters)



>mm_chr16_82315466_82316281
          Length = 816

 Score =  774 bits (400), Expect = 0.0
 Identities = 409/412 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcttcttgttgcatctattctattttgaatagaagaaatctttttcagatatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gaattcttcttcttgttgcatctattctattttgaatagaagaaatctttttcagatatc 557

                                                                       
Query: 65  tgtaaagacgtgtgctagctgaaaagtgtatctagggcatgtcaaaaatcatgacagact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgtaaagacgtgtgctagctgaaaagtgtatctagggcatgtcaaaaatcatgacagact 497

                                                                       
Query: 125 tctgtatgaagatattgattaagtatagttagttctacttaaaaatacaaagtttaaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tctgtatgaagatattgattaagtatagttagttctacttaaaaatacaaagtttaaaga 437

                                                                       
Query: 185 ggtttttaattattcacctaaaactattcatttatctgataaaataacatagctctctcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 436 ggtttttaattattcacctaaaactattcatttatctgataaaataacataactctcccc 377

                                                                       
Query: 245 ttaaattttgaaatgtagatttcctttggtcatttttctcaatgtccatttaactggtga 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 376 ttaaattttgaaatgtagatttcctttggtcatttttctcaatgtccatttaactgatga 317

                                                                       
Query: 305 aaaaataatgcttgtgtcattcaatgtcaacataatttcagacattttagatatagatgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aaaaataatgcttgtgtcattcaatgtcaacataatttcagacattttagatatagatgt 257

                                                               
Query: 365 ttgtttgacatctggttgccagtggaaatttcttatgaaatcaaattttatg 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttgtttgacatctggttgccagtggaaatttcttatgaaatcaaattttatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)