BAC Information

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BAC

Clone NameMSMg01-196I06
Chromosome16 (Build37)
Map Location 26,962,775 - 26,962,963
singlet/doubletsinglet
Overlap geneGm606
Upstream geneLeprel1, Cldn1, Cldn16, LOC100043057, Il1rap
Downstream geneOstn, Uts2d, Ccdc50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196I06.T7 (MSMg01no196_i06.b1)MSMg01-196I06.TJ (MSMg01no196_i06.g1)
ACCAG384602
length735869
length of high quality
(start - end)
---189 (184 - 372)
definitionCHROMAT_FILE: MSMg01no196_i06.b1 PHD_FILE: MSMg01no196_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:05 2005CHROMAT_FILE: MSMg01no196_i06.g1 PHD_FILE: MSMg01no196_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TTTTTTTTTTCCTTTNCTTCCTCTATCTTCCTTTTTCTTCTTGCTCCCCC
CCCTTGCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGTTCCAGAGAAATTCTACTTTGGTTAAACGTC
TGGAAGAGAAGGCCAAGGTATGTAATTATCCCTTCTACAAGTTCAAGTCA
GTGAGTTGACAGAGGAAATCACTGCATACCATCCCATGACTGATAACATG
AAGTTTGTTTGAACAAGGCGTCTTCATGGGACTTAATAGAATCATTACCC
TTCCTGATTCAGATGGCTTCGACAGGATTTTTGTATACCATTTCCCAGAA
GTTTCTAGTTTCAGATTTTTAGTTAGATGTTACTACGGAAGTTCTTTAAA
GACTAAAGTCAATCATATTTATTTTATGACTATGGCGCCCATAAAGTGTG
TAATATTTGAGCAGAATTCACCCGCCCCTAAATATTAATATACCTTACCG
CGTTTTACTCTGCTACTTAACATTCCTTCCTTAACTTTTCCGTTTTAGTT
ACGTTTTCCCCTGTTTTTTTTATTATCTTCTTTTACTATTTGCCCTCCTA
ACTTACTAAAGTATTACTTTTACCCCCTCCCTAATTTAGTTTTTGATATC
TATTTATATATTTTTCTTTACCTTTTCTTTACTCTAACTCCCTTTATTTT
AAATCGATATATTTTTTTCTTATCTTTATCTCTCCATATGCAGAACACAC
TAATGACCTCGTTTCGTTCATATTGTATCCACGCTTATTCTTCCTTTTTT
TCCCTACTTTCCTTTACCTCGTTTTTATTACCGTTTATCTATATTCTCTC
TGTATTTCCCTCTCTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_i06.g1 MSMg01no196_i06.g1 CHROMAT_FILE:
MSMg01no196_i06.g1 PHD_FILE: MSMg01no196_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:05 2005
         (189 letters)



>mm_chr16_26962575_26963163
          Length = 589

 Score =  342 bits (177), Expect = 6e-99
 Identities = 186/189 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctacaagttcaagtcagtgagttgacagaggaaatcactgcataccatcccatgactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tctacaagttcaagtcagtgagttgacagaggaaatcactgcataccatcccatgactga 330

                                                                       
Query: 61  taacatgaagtttgtttgaacaaggcgtcttcatgggacttaatagaatcattacccttc 120
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gaacatgaagtttgcttgaacaaggcgtcttcatgggacttaatagaatcattacccttc 270

                                                                       
Query: 121 ctgattcagatggcttcgacaggatttttgtataccatttcccagaagtttctagtttca 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctgattcagatggcttcaacaggatttttgtataccatttcccagaagtttctagtttca 210

                    
Query: 181 gatttttag 189
           |||||||||
Sbjct: 209 gatttttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)