BAC Information

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BAC

Clone NameMSMg01-196I07
Chromosome16 (Build37)
Map Location 26,962,730 - 26,963,013
singlet/doubletsinglet
Overlap geneGm606
Upstream geneLeprel1, Cldn1, Cldn16, LOC100043057, Il1rap
Downstream geneOstn, Uts2d, Ccdc50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196I07.T7 (MSMg01no196_i07.b1)MSMg01-196I07.TJ (MSMg01no196_i07.g1)
ACCAG384603AG384604
length741748
length of high quality
(start - end)
320 (58 - 377)284 (88 - 371)
definitionCHROMAT_FILE: MSMg01no196_i07.b1 PHD_FILE: MSMg01no196_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:05 2005CHROMAT_FILE: MSMg01no196_i07.g1 PHD_FILE: MSMg01no196_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGAAACAAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCCACTAAAATAAGAAACCAGACAAGGTTATCCAT
TTTCCCATACCCATTCAGTAAAGTTCTTGAAGTCTCGGCTATAGGAATAA
GACAACTGAAGAAAATCAAGGGGATACAAATTGAAAAGGAAGAACTCAAT
GTGTCTTTATTTGCAGATGATATGATAGTATACATAAGTGTTCCCAAAAA
TTCCATCAGGAAACTCCTACAGCAGAAATACCTGCAGCCTTCCAATGTGT
CAATGATAAATTGCCTGAAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGATATTATTGAACGACAGAAAGAA
AGAAAGAAAGAAAGAAAGAGAGAAACGGGGGGAACAACAGTCATCGCAAT
AGCCTCAAATAATTAAAATATATATATATTGGGGTAACTCTAACCAAGCA
AGTGAAAGACATTTGATAGAAAAATTCTGAGATATTGAAGAAAGAAATTG
AAAAAAACTAAGTAAAGATAGAAAGAACCCTGTGCTTGTGGAGCAGTAGA
ATTAATATAGTAATACGGGGTCATTTACTGGACATCCTGTAAATTTGAGA
ATTTTCACACTCGCACATGAGTTTTCTTCTCTCTCCCTCCAGCAATGCGA
ACATCTCCCGTATGACTTTTTTACCTTCTCGAATTTCTGGG
CAAAAAAATTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACTTTGGTTAAA
CGTCTGGAAGAGAAGGCCAAGGTATGTAATTATCTCTTCTACAAGTTCAA
GTCAGTGAGTTGACAGAGGAAATCACTGCATACCATCCCATGACTGAGAA
CATGAAGTTTGCTTGAACAAGGCGTCTTCATGGGACTTAATAGAATCATT
ACCCTTCCTGATTCAGATGGCTTCGACAGGATTTTTGTATACCATTTCCC
AGAAGTTTCTAGTTTCAGATTTTTAGCTAGATGTGACTACGGAAGTTCTT
TAAAGACTAAAGTTAATCAGAGGAATTTATGACTATGGTGCTCATAAAGT
GTGGAATATTTGAGTAGAAATCAAATGTCAAAAAATATTGGTAGTTCTAA
GTATGTGTTAGATGTTAGCTAATGCTCTTCCTTAGGGCCTGTCTTAGCTA
GGGTTTTATTGTTATGATTATACCCCATGTATCTGCCAACTTTTACAATG
AAAATTATTTAAATCGAGCTGCCTTATAGTCCATACAATTATTGCATTTT
CCTCCTGTTCATCATTTTGGCCCTTTTTTTCGCCGCATTTTCCCTATTTT
CAACCTTTCTTCCCATTTTTACTTTCACATTCGCCTTCTCCCGTTATCCT
CTTCAACAATTTCCCCCCATTTTATTTTCCTTTGTTCCTTTTAATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_i07.g1 MSMg01no196_i07.g1 CHROMAT_FILE:
MSMg01no196_i07.g1 PHD_FILE: MSMg01no196_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:05 2005
         (284 letters)



>mm_chr16_26962530_26963213
          Length = 684

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactttggttaaacgtctggaagagaaggccaaggtatgtaattatctcttctacaagtt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 484 tactttggttaaacgtctggaagagaaggccaaggtatgtaattatctgttctacaagtt 425

                                                                       
Query: 61  caagtcagtgagttgacagaggaaatcactgcataccatcccatgactgagaacatgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 caagtcagtgagttgacagaggaaatcactgcataccatcccatgactgagaacatgaag 365

                                                                       
Query: 121 tttgcttgaacaaggcgtcttcatgggacttaatagaatcattacccttcctgattcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tttgcttgaacaaggcgtcttcatgggacttaatagaatcattacccttcctgattcaga 305

                                                                       
Query: 181 tggcttcgacaggatttttgtataccatttcccagaagtttctagtttcagatttttagc 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tggcttcaacaggatttttgtataccatttcccagaagtttctagtttcagatttttagc 245

                                                       
Query: 241 tagatgtgactacggaagttctttaaagactaaagttaatcaga 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tagatgtgactacggaagttctttaaagactaaagttaatcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)