Query= MSMg01no198_d02.b1 MSMg01no198_d02.b1 CHROMAT_FILE:
MSMg01no198_d02.b1 PHD_FILE: MSMg01no198_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:20 2005
(679 letters)
>mm_chr16_58485788_58486866
Length = 1079
Score = 841 bits (435), Expect = 0.0
Identities = 438/439 (99%), Gaps = 1/439 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagcagatagttagagtgacaggccagtgagactcagggattgtcccaatttcc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggaattcagcagatagttagagtgacaggccagtgagactcagggattgtcccaatttcc 380
Query: 64 ttctgtcacagcctgccctgtgctctgattgcaagcacaggccaccatgttatgtatgct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttctgtcacagcctgccctgtgctctgattgcaagcacaggccaccatgttatgtatgct 320
Query: 124 ggtttcaaggattaaccttagggtctcatacttgcaaaacaagtgctgtgctgatggaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggtttcaaggattaaccttagggtctcatacttgcaaaacaagtgctgtgctgatggaga 260
Query: 184 catgtccctacccctggttttcctcttatttattttatcagcaaggtctagatgaattcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 catgtccctacccctggttttcctcttatttattttatcagcaaggtctagatgaattcc 200
Query: 244 caaccttcctaatatggtgactctttaatacacctcatgttatcgtgatcccctgtcata 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 caaccttcctaatatggtgactctttaatacacctcatgttatcgtgatcccctgtcata 140
Query: 304 aagttattccattactacttcataactgtgtcatttctctactattaagaataactacct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 aagttattccattactacttcataactgtgtcatttctctactattaagaataactacct 80
Query: 364 gttttctgatggtcttaggggaccctggtgaaagttttgttagaa-ccccccctccaagg 422
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 79 gttttctgatggtcttaggggaccctggtgaaagttttgttagaacccccccctccaagg 20
Query: 423 aattgtgacccacaagttg 441
|||||||||||||||||||
Sbjct: 19 aattgtgacccacaagttg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no198_d02.g1 MSMg01no198_d02.g1 CHROMAT_FILE:
MSMg01no198_d02.g1 PHD_FILE: MSMg01no198_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:20 2005
(575 letters)
>mm_chr16_58422664_58423638
Length = 975
Score = 1081 bits (559), Expect = 0.0
Identities = 571/575 (99%)
Strand = Plus / Plus
Query: 1 cattacacttccaaggttcttcatatcaaaaatagcataatctgaaatgtttaattatct 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattacacttccaaggttctgcatatcaaaaatagcataatctgaaatgtttaattatct 260
Query: 61 atcaaagaattgtttcttaaatattggaacacttctaggaatcacaagctagtttcaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaaagaattgtttcttaaatattggaacacttctaggaatcacaagctagtttcaaat 320
Query: 121 gttagatactattttagggtagttgtttttgcctctggaagggaaaatgttaatgattgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttagatactattttagggtagttgtttttgcctctggaagggaaaatgttaatgattgt 380
Query: 181 tgaaaagggacttgtatttcagttgcttattttcacactggaggtttttatagccttatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaaagggacttgtatttcagttgcttattttcacactggaggtttttatagccttatg 440
Query: 241 attttactctaggttagatccaagagggacagagagaggcagcgagagggaattttatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attttactctaggttagatccaagagggacagagagaggcagcgagagggaattttatgg 500
Query: 301 cagctttggaaggaaatggtatttttttattatgtaagagcctgttttactgtaaaatca 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagctttggaaggaaatggtatttttttattatgtaagagcctgttttactgtaaaatca 560
Query: 361 gtgggtgtatttcacacccacatttacttcattctctccatattttttatattattaacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgggtgtatttcacacccacatttacttcattctctccatattttttatattattaacc 620
Query: 421 cagtatgcctagttctcgtgcatgaatgaaatcaggggtcggaaataaagtgtagtgttg 480
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 cactatgcctagttctcgtgcatgaatgaaatcaggggtcggaaataaagtatagtgttg 680
Query: 481 actgaaagctaaactttatatgagaagtgtttgttcagaaagcagaatttatagtatcca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actgaaagctaaactttatatgagaagtgtttgttcagaaagcagaatttatagtatcca 740
Query: 541 actcaaaagtagagcagcatgtagtactaacgtgg 575
|||||||||||||||||||||||||||||||||||
Sbjct: 741 actcaaaagtagagcagcatgtagtactaacgtgg 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
