BAC Information

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BAC

Clone NameMSMg01-199C07
Chromosome16 (Build37)
Map Location 26,215,485 - 26,254,191
singlet/doubletdoublet
Overlap genenone
Upstream gene5430420C16Rik, Trp63, LOC100043571, Leprel1
Downstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199C07.T7 (MSMg01no199_c07.b1)MSMg01-199C07.TJ (MSMg01no199_c07.g1)
ACCAG386193AG386194
length728733
length of high quality
(start - end)
681 (45 - 725)646 (85 - 730)
definitionCHROMAT_FILE: MSMg01no199_c07.b1 PHD_FILE: MSMg01no199_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:36 2005CHROMAT_FILE: MSMg01no199_c07.g1 PHD_FILE: MSMg01no199_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,253,547 - 26,254,191)(26,215,485 - 26,216,114)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTCCTGCTTCTTCCTTTATATTTAGCCTTTTGTGGTTTTCTTTTT
CTCGTAACTGTACTATACTCAGATATAGCTTTCTCTACATATATTATTGG
ATAGATTCCACGTAACAGAGACAACATGCAGCTCATTTCTTTCTGAGATT
GTGTGATGATTCATATTATACATTCTAACTCTATCCATTTTCTTGAGAAA
TTTTAAACTTCACTTCTCTTAAGAGATGAGTAATATTATAGTATATGTAT
ATGTATGCTAGATATTTATTATGTGTTCATTTGTTGATGAACAACATGGT
TGATTCCTGCATGTATGAAATATAAGAATTTAAAAAAGATAAACAAGAGA
TTTCTAGTCATAAAGAATACATATATATTAAATCACATATATTTACTATA
GTAATTTCTGTAAAATGTTTATCTTATGATTTGCATGAAGAGGTTCAGTC
TTTCTTTACCAAATCATTCACACTGTTTCTCTTATTTTATTATACACACA
CTGTTGTTATGGCCATAAAGAGTAATAAGACATATTCAGAGACTTGAAGC
CAACTAAAATTCTGTGAATGGCAATCGTCATGATTAAGAAAAGGTTTGTA
ATTTATTTCTTTTTTCTTATTATTAAAAAAATTATTTATTGTTAAAAACC
TTATGTCTTATTATTAAAACATAAATGA
TTATTAACACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATATATCTTCTCC
CTTTCCAATATGGGTGCTGTCAATGTGACTGCATTAATGAGCATGGCATT
TGGGTGGTGAAGAAGGCAAGAGATCTGATCTGCTCTTAGCAGGAGGCATT
TACATCATACATACAACATCATACATACAATGTTCAGCTAGTTAGCTTAC
TTGATGTTTTCTGTTATGCAGCAAGGAGGCTCTCCCCCAACACAAATCAC
AGTGCCTGGGTCTTAGAATCTTCAGCCCCAGAACTCTAAACAATAAATTT
AATTTCTTTTTAAATTACCACATCTCAGGTGTTCTGCTATATCTGCACAA
GCAGCCTAAGCTAGGATGTTAGTCATACCTTCAGATCCAGTCAAACTCTC
AACAGTCAAAGCAGGTTTTGCACACAAAAATTTAAGAATTACCAGTGTCC
AAAATTGTGTTGTGAAAGCACAAATTATGTCATTGGGTCACTGTAATCAT
GATAGTATGTGAATTAAAACAGGCTTTTTATTTTTATTCTGTTTTCTAGG
TCTATTCAGTTTAACTCTTGGGAATGTGACTCTGTACATTGATCTTTTTG
TTCAGAGAATATATATATATATATATATATATATATATATATATATATAT
ATATATATATATATATATATATATATACCTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_c07.b1 MSMg01no199_c07.b1 CHROMAT_FILE:
MSMg01no199_c07.b1 PHD_FILE: MSMg01no199_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:36 2005
         (681 letters)



>mm_chr16_26253111_26254191
          Length = 1081

 Score = 1201 bits (621), Expect = 0.0
 Identities = 639/645 (99%)
 Strand = Plus / Minus

                                                                        
Query: 37   ccttttgtggttttctttttctcgtaactgtactatactcagatatagctttctctacat 96
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1081 ccttttgtggttttctttttctcataactgtactatactcagatatagctttctctacat 1022

                                                                        
Query: 97   atattattggatagattccacgtaacagagacaacatgcagctcatttctttctgagatt 156
            || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 atgttgttggatagattccacgtaacagagacaacatgcagctcatttctttctgagatt 962

                                                                        
Query: 157  gtgtgatgattcatattatacattctaactctatccattttcttgagaaattttaaactt 216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  gtgtgatgattcatattatacattctaactctatccattttcttgagaaattttaaactt 902

                                                                        
Query: 217  cacttctcttaagagatgagtaatattatagtatatgtatatgtatgctagatatttatt 276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  cacttctcttaagagatgagtaatattatagtatatgtatatgtatgctagatatttatt 842

                                                                        
Query: 277  atgtgttcatttgttgatgaacaacatggttgattcctgcatgtatgaaatataagaatt 336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  atgtgttcatttgttgatgaacaacatggttgattcctgcatgtatgaaatataagaatt 782

                                                                        
Query: 337  taaaaaagataaacaagagatttctagtcataaagaatacatatatattaaatcacatat 396
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  tataaaagataaacaagagatttctagtcataaagaatacatatatattaaatcacatat 722

                                                                        
Query: 397  atttactatagtaatttctgtaaaatgtttatcttatgatttgcatgaagaggttcagtc 456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  atttactatagtaatttctgtaaaatgtttatcttatgatttgcatgaagaggttcagtc 662

                                                                        
Query: 457  tttctttaccaaatcattcacactgtttctcttattttattatacacacactgttgttat 516
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 661  tttctttaccaaatcattcacattgtttctcttattttattatacacacactgttgttat 602

                                                                        
Query: 517  ggccataaagagtaataagacatattcagagacttgaagccaactaaaattctgtgaatg 576
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  ggccataaagagtaataagacatattcagagacttgaagccaactaaaattctgtgaatg 542

                                                                        
Query: 577  gcaatcgtcatgattaagaaaaggtttgtaatttatttcttttttcttattattaaaaaa 636
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  gcaatcgtcatgattaagaaaaggtttgtaatttatttcttttttcttattattaaaaaa 482

                                                         
Query: 637  attatttattgttaaaaaccttatgtcttattattaaaacataaa 681
            ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 481  attatttattgttaaaaactttatgtcttattattaaaacataaa 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no199_c07.g1 MSMg01no199_c07.g1 CHROMAT_FILE:
MSMg01no199_c07.g1 PHD_FILE: MSMg01no199_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:36 2005
         (646 letters)



>mm_chr16_26215286_26216331
          Length = 1046

 Score = 1180 bits (610), Expect = 0.0
 Identities = 625/630 (99%), Gaps = 1/630 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatatatcttctccctttcc-aatatgggtgctgtcaatgtgactgcattaatgagca 59
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 200 cacatatatcttctccctttccaaatatgggtgctgtcaatgtgactgcattaatgagca 259

                                                                       
Query: 60  tggcatttgggtggtgaagaaggcaagagatctgatctgctcttagcaggaggcatttac 119
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 260 tggcatttgggtggtgaagaaggcaagatatctgatctgctcttagcaggaggcatttac 319

                                                                       
Query: 120 atcatacatacaacatcatacatacaatgttcagctagttagcttacttgatgttttctg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atcatacatacaacatcatacatacaatgttcagctagttagcttacttgatgttttctg 379

                                                                       
Query: 180 ttatgcagcaaggaggctctcccccaacacaaatcacagtgcctgggtcttagaatcttc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttatgcagcaaggaggctctcccccaacacaaatcacagtgcctgggtcttagaatcttc 439

                                                                       
Query: 240 agccccagaactctaaacaataaatttaatttctttttaaattaccacatctcaggtgtt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agccccagaactctaaacaataaatttaatttctttttaaattaccacatctcaggtgtt 499

                                                                       
Query: 300 ctgctatatctgcacaagcagcctaagctaggatgttagtcataccttcagatccagtca 359
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 500 ctgctatatctgcacaagcagcctaagctaggatgtcagtcataccttcagatccagtca 559

                                                                       
Query: 360 aactctcaacagtcaaagcaggttttgcacacaaaaatttaagaattaccagtgtccaaa 419
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 560 aactctcaacagtcaaagcaggttttgcacacaaaaattcaagaattaccagtgtccaaa 619

                                                                       
Query: 420 attgtgttgtgaaagcacaaattatgtcattgggtcactgtaatcatgatagtatgtgaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 attgtgttgtgaaagcacaaattatgtcattgggtcactgtaatcatgatagtatgtgaa 679

                                                                       
Query: 480 ttaaaacaggctttttatttttattctgttttctaggtctattcagtttaactcttggga 539
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 680 ttaaaacaggctttttatttttattttgttttctaggtctattcagtttaactcttggga 739

                                                                       
Query: 540 atgtgactctgtacattgatctttttgttcagagaatatatatatatatatatatatata 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atgtgactctgtacattgatctttttgttcagagaatatatatatatatatatatatata 799

                                         
Query: 600 tatatatatatatatatatatatatatata 629
           ||||||||||||||||||||||||||||||
Sbjct: 800 tatatatatatatatatatatatatatata 829



 Score =  107 bits (55), Expect = 4e-27
 Identities = 55/55 (100%)
 Strand = Plus / Minus

                                                                  
Query: 588 tatatatatatatatatatatatatatatatatatatatatatatatatatatat 642
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 tatatatatatatatatatatatatatatatatatatatatatatatatatatat 775



 Score =  107 bits (55), Expect = 4e-27
 Identities = 55/55 (100%)
 Strand = Plus / Minus

                                                                  
Query: 586 tatatatatatatatatatatatatatatatatatatatatatatatatatatat 640
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 tatatatatatatatatatatatatatatatatatatatatatatatatatatat 775



 Score =  107 bits (55), Expect = 4e-27
 Identities = 55/55 (100%)
 Strand = Plus / Minus

                                                                  
Query: 584 tatatatatatatatatatatatatatatatatatatatatatatatatatatat 638
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 tatatatatatatatatatatatatatatatatatatatatatatatatatatat 775



 Score =  107 bits (55), Expect = 4e-27
 Identities = 55/55 (100%)
 Strand = Plus / Minus

                                                                  
Query: 582 tatatatatatatatatatatatatatatatatatatatatatatatatatatat 636
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 tatatatatatatatatatatatatatatatatatatatatatatatatatatat 775



 Score =  107 bits (55), Expect = 4e-27
 Identities = 55/55 (100%)
 Strand = Plus / Minus

                                                                  
Query: 580 tatatatatatatatatatatatatatatatatatatatatatatatatatatat 634
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 tatatatatatatatatatatatatatatatatatatatatatatatatatatat 775



 Score =  107 bits (55), Expect = 4e-27
 Identities = 55/55 (100%)
 Strand = Plus / Minus

                                                                  
Query: 578 tatatatatatatatatatatatatatatatatatatatatatatatatatatat 632
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 tatatatatatatatatatatatatatatatatatatatatatatatatatatat 775



 Score =  107 bits (55), Expect = 4e-27
 Identities = 55/55 (100%)
 Strand = Plus / Minus

                                                                  
Query: 576 tatatatatatatatatatatatatatatatatatatatatatatatatatatat 630
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 tatatatatatatatatatatatatatatatatatatatatatatatatatatat 775



 Score =  105 bits (54), Expect = 1e-26
 Identities = 54/54 (100%)
 Strand = Plus / Minus

                                                                 
Query: 575 atatatatatatatatatatatatatatatatatatatatatatatatatatat 628
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 atatatatatatatatatatatatatatatatatatatatatatatatatatat 775



 Score =  105 bits (54), Expect = 1e-26
 Identities = 54/54 (100%)
 Strand = Plus / Minus

                                                                 
Query: 590 tatatatatatatatatatatatatatatatatatatatatatatatatatata 643
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 tatatatatatatatatatatatatatatatatatatatatatatatatatata 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 214
Number of extensions: 69
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 18
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)