ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGTCTCCACTGGACCTCAGGGGGACTTGTTTAGCAAAAATAAG
TGGGCACTCACATCTCCAAGGCCCTATAACAATAGCATCAGACTATATCT
TAAAGCAATCCAGAACAAAACTTTCCCTGAGCCAACCGTGGCTATTGTCA
CCTCTCCAGATATTGAGTAGTTTCTTCTGTGACCAGTTGTGATGGCATGA
AGTATCTTTTGTAGAACTGTCGTCCATGACAGAGACAAATGTGATGGAGC
AAACCTGCCATCACTGAGGCAGGAGAATCAAGAATCTGGCCTGGGTAACT
TACTGAGATCCTGTCTCAAAATAAATAAAAGGGGGGGGGCTGTAATTCCG
TGGTAGAATTTTTCCGCACCACCCCGAAGGCCCTGCAATCATCCCCGCCC
CCAAGACTGGAGGGAAGTAAGTTACTGTGTGTCCTTCTGATTTTACAGCG
GAGGAGGAGACCAAGGCACAGTGAGTTAAATGGCCAGGTCCATCCAGGCT
CTTTCCAATGGGGCAGGGTCGAATGCATGATTGCTTTAGCTTTATGCGGC
CATGAGGTGGCACTGTTGCAGCTGTGCCTGTGCAGTCTCTGTTGACAAAC
AGTTCTTCCTTTGATCTTAGGAGAATGCTGGTTCCTGCCCCAGATCTTAC
CCCTTTTCTTCTTTTTGAGGAACGCTTTCACGTCTCTTGCTACCATTGAT
TATTCATGAACT

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCCAGTTACTAAGTGG
GCGGGGAAACTAGATAGGCAGTGGTCAAAAGAAGTATAAATGTGTAATAA
ACACATGAAATGATTTTCAGCATCCACAGCAATCATGGAAACACTGTTGA
GGTTTGGTCTGTTGCTATGCATTGTGATACTAAGTTCTGTACAGAAGTTC
TAGGCCTATAAGTGAATTCTCACATTTATCAGCTTTTGTCATGCAAACCT
TGCTCCTTAATTTAAAACTATTGGTTAAATAAAACAGGCTACAGCCAATT
ACTGGAGGGCTTAGGTAGTGGGTTTTGAGTTACCTGAGTGGGGATAGAGA
AGTGAGAGGAGAGANCANNAGGAGCCCCCCCCTTGTNGATCTATTGTAAA
CGTTCAGTTTCCACTACGGCCCAATAGCATGTAAAGAGCTGTTTTTCACA
CCGATAATACCTGCCTTTTTACGATGTCATATTTTTTGCCCCATTAATTT
TCAGGCCTTTTTTGCGATTCCCCCAACGGATTTTGTTATTACGCTTCTAT
TTTTAATTCCTTATTTCCCCCAACCCTTCAACATATTTTTTGACCCTGCT
TTCTTAACACTTCTTTACGATTTTACCCTTCTTTTGCACATTTTACCCGA
CTTCTCCCTACTTTACCCTATTTCCACTATTTACTCTTACACCTTCTTTC
CTCATTTTACCG

Query= MSMg01no199_e22.b1 MSMg01no199_e22.b1 CHROMAT_FILE:
MSMg01no199_e22.b1 PHD_FILE: MSMg01no199_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:49 2005
         (571 letters)



>mm_chr16_13440868_13441838
          Length = 971

 Score =  810 bits (419), Expect = 0.0
 Identities = 437/443 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtctccactggacctcagggggacttgtttagcaaaaataagtgggcactca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggaattctgtctccactggacctcagggggacttgtttagcaaaaataagtgggcactca 384

                                                                       
Query: 64  catctccaaggccctataacaatagcatcagactatatcttaaagcaatccagaacaaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 catctccaaggccctataacaatagcatcagactatatcttaaagcaatccagaacaaaa 324

                                                                       
Query: 124 ctttccctgagccaaccgtggctattgtcacctctccagatattgagtagtttcttctgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctttccctgagccaaccgtggctattgtcacctctccagatattgagtagtttcttctgt 264

                                                                       
Query: 184 gaccagttgtgatggcatgaagtatcttttgtagaactgtcgtccatgacagagacaaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaccagttgtgatggcatgaagtatcttttgtagaactgtcgtccatgacagagacaaat 204

                                                                       
Query: 244 gtgatggagcaaacctgccatcactgaggcaggagaatcaagaatctggcctgggtaact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gtgatggagcaaacctgccatcactgaggcaggagaatcaagaatctggcctgggtaact 144

                                                                       
Query: 304 tactgagatcctgtctcaaaataaataaaagggggggggctgtaattccgtggtagaatt 363
           ||||||||||||||||||||||||||||||  |||||| |||||||||| ||||||||||
Sbjct: 143 tactgagatcctgtctcaaaataaataaaaaaggggggtctgtaattccatggtagaatt 84

                                                                       
Query: 364 tttccgcaccaccccgaaggccctgcaatcatccccgcccccaagactggagggaagtaa 423
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  tttccgtagcaccccgaaggccctgcaatcatccccgcccccaagactggagggaagtaa 24

                                  
Query: 424 gttactgtgtgtccttctgattt 446
           |||||||||||||||||||||||
Sbjct: 23  gttactgtgtgtccttctgattt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)