BAC Information

Click to search

BAC

Clone NameMSMg01-201D03
Chromosome16 (Build37)
Map Location 83,467,069 - 83,467,724
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665260, EG545172
Downstream geneLOC100039572, EG621729, LOC640489, LOC665664
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201D03.T7 (MSMg01no201_d03.b1)MSMg01-201D03.TJ (MSMg01no201_d03.g1)
ACCAG386846AG386847
length716711
length of high quality
(start - end)
672 (45 - 716)590 (74 - 663)
definitionCHROMAT_FILE: MSMg01no201_d03.b1 PHD_FILE: MSMg01no201_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:11 2005CHROMAT_FILE: MSMg01no201_d03.g1 PHD_FILE: MSMg01no201_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTTTCAAACCCAATCATTACCATTCACAGATACCTAGATCAAAGA
CTTCCATGAACTCTAGGTAATTCTTTATATTTAGCAACTTCAATACTCCT
TTGGCTATTTTATTCCATTCATGTCTTCTCCAGTTTTTTTTAAGTGAATG
AATTAATTTAGTACCTATAGTTTTCTATACAGATTGCAACTTCCCTTCCC
TTCCCTTCTCCCATTATCTGCCTCTCATCTCCCCCTCTCAATGAAGGGGA
GGAAGAGTTTCCATGAATATCAATCTGGCGTGGCATATTCAACTGTAGTA
TGGCAAGGTATATCTTCTCATATTGTATCTATATCAGGCAGCCCAATTAG
GGAGAAAGGAACCAAAAAAAAGGAAGAAATCTGAGAAAACCTATGCTCCT
GCTGTTAGGAATCTCACATGAAGAGCAAGATGCACAACTTTTTCATATGT
GCACAGGGCCTATATTTGTCCCATGCATGATCTCCATTTGGGTGTTATAT
TTCTGCATGCAACTATGAGCCCAGGTGAGTTGATTCTGTAGGTTTGTTTC
TGGAGTTCTTGACATTGCTTGCTTTTTCAATCTTTCCTTTCCCTCTTCCA
CAGGATTCAACAAGTTCTGTCTAATGTTAGGCTGTGGTATCAATATATGT
TTCCATTAGTTTCCAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTTTAGCTCTGTACCCCATGTTTTTG
TAGTCTCTAGAACTTCTTGAGTTCTTTGTATATATTGGATATTAGCCCTC
TATAAGATGTAGGATTGGTAAACATCTTTTCTCATTCTGTAGGTTGCCAT
TTTGCCCTGATTACATGGTCCTTTGTGTTGCAGAAGATTTTCAATTTTAT
GAGATCCCATTTATCTATAGTTGATTGTAGAGCCTGAGCCATTGGTGCTC
TGTTAAGAAATGCTGCTGTGTTCTGCTCTTTCCCACTTTCTCTTCTATTA
GATTCAGTATACATAGCTTTATGTGGCAATCCTTGATCCACTTGGATTTG
AGATTTGCACAACCAGGAATATGTGGATCAATTTGTATTCTTCAACTTGG
TGACTGCCACCTGAACCAGCAGCATTTGTGGAATATGCTGTCTTTTTTCC
ACTGGACGATTTTGGCTTCTTTGTCAAAGATCAGGTTTGTGGGTTTACGT
GTGGGATCTTAAATTCTATTTTATGTATCTATCTGTCTTTCTCTGTACCA
CTATCATGCAGTTTTTATCACTATTGCTCTATAGTACACCTTGAGGTCAG
GAGTGGTGAATTCCCCAGATGTTCTCTTATTGTTCAGAATAGTTTTTGCT
ACCCTGGGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_d03.b1 MSMg01no201_d03.b1 CHROMAT_FILE:
MSMg01no201_d03.b1 PHD_FILE: MSMg01no201_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:11 2005
         (672 letters)



>mm_chr16_83466866_83467938
          Length = 1073

 Score = 1114 bits (576), Expect = 0.0
 Identities = 641/670 (95%), Gaps = 15/670 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttttcaaacccaatcattaccattcacagatacctagatcaaagacttccat 63
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttttcaaacccaatcattaccatccacagatacctagatcaaagacttccat 263

                                                                       
Query: 64  gaactctaggtaattctttatatttagcaacttcaatactcctttggctattttattcca 123
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 264 gaactctaggtaattctttatatttagcaacttcaatactcttttggctattttattcca 323

                                                                       
Query: 124 ttcatgtcttctccagtttttttt-aagtgaatgaattaatttagtacctatagttttct 182
            ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 324 atcatgtcttctccagtttttttttaagtgaatgaattaatttagtacctataattttct 383

                                                                       
Query: 183 atacagattgcaacttcccttcccttcccttctcccattatctgcctctcatctccccct 242
           ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 384 atacagattgcaacttcccttcccttctcttctcccattaactgcctctcatctccccct 443

                                                                       
Query: 243 ctcaatgaaggggaggaagagtttccatgaatatcaatctggcgtggcatattcaactgt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 444 ctcaatgaaggggaggaagagtttccatgaatatcaatctggcgtggcatactgaactgt 503

                                                                       
Query: 303 agtatggcaaggtatatcttctcatattgtatctatatcaggcagcccaattagggagaa 362
           ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 504 agtatggcaaggtatatcttctcatattgtatctatagcaggcagcccaactagggagaa 563

                                                                       
Query: 363 aggaaccaaaaaaaaggaagaaatctgagaaaacctatgctcctgctgttaggaatctca 422
           | |||||||||||  |||||||||| ||||||         ||||   ||||||||||||
Sbjct: 564 aagaaccaaaaaa--ggaagaaatcagagaaa---------cctg---ttaggaatctca 609

                                                                       
Query: 423 catgaagagcaagatgcacaactttttcatatgtgcacagggcctatatttgtcccatgc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 catgaagagcaagatgcacaactttttcatatgtgcacagggcctatatttgtcccatgc 669

                                                                       
Query: 483 atgatctccatttgggtgttatatttctgcatgcaactatgagcccaggtgagttgattc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 atgatctccatttgggtgttatatttctgcatgcaactatgagcccaggtgagttgattc 729

                                                                       
Query: 543 tgtaggtttgtttctggagttcttgacattgcttgctttttcaatctttcctttccctct 602
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 730 tgtaggtttgtttctggagttcttgacattgcttgctttttcaatcttttctttccctct 789

                                                                       
Query: 603 tccacaggattcaacaagttctgtctaatgttaggctgtggtatcaatatatgtttccat 662
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tccacaggattcaaaaagttctgtctaatgttaggctgtggtatcaatatatgtttccat 849

                     
Query: 663 tagtttccag 672
           ||||||||||
Sbjct: 850 tagtttccag 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1073
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1063
Effective search space:   703706
Effective search space used:   703706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)