BAC Information

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BAC

Clone NameMSMg01-201G20
Chromosome16 (Build37)
Map Location 45,070,339 - 45,156,782
singlet/doubletdoublet
Overlap geneCcdc80, Slc35a5
Upstream geneAtp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021
Downstream geneAtg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201G20.T7 (MSMg01no201_g20.b1)MSMg01-201G20.TJ (MSMg01no201_g20.g1)
ACCAG386998AG386999
length1,1571,205
length of high quality
(start - end)		376 (77 - 452)568 (129 - 696)
definitionCHROMAT_FILE: MSMg01no201_g20.b1 PHD_FILE: MSMg01no201_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:36 2005CHROMAT_FILE: MSMg01no201_g20.g1 PHD_FILE: MSMg01no201_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,156,409 - 45,156,782)(45,070,339 - 45,070,906)
sequence
NNTTTTCAGTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CTACCATCCATTGACATCCTTTAGAAAAAATATTTTCAATTTTTTTTAAA
AAGTCACACCCAGCTCATTTTCACTTTCTTATTTAGCCCAAGATATTAGC
CCAGGAAATGCTGTTCCCCAAAGGTAAGGTGGTTCTTCCTACCTCAAGCT
AATTTACATAGTCCCTTACAGGCATGCTCAGAGGCTAATCTAATTGAGAT
AATTCCTCACTAGACCAGAGGCCTAGTCACAGTCATAGAGTTCATAGTGC
ATACAGACGATATCCTTAAGAGCTTGGTTTATTAGAAGAGATAAACATGT
AAATATGTTATAGAAGTCTATTAAAAGAAATGGAATAAAAAAGACTATGT
CCTAGCTGCAGAGACAGTCTGAAAAAGTACTCTCTGGGAGAGGATGGTGG
NNNTTTNTNNTNNTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTT
TCCTTTTTTTNTTTTTTTTTTTTTTTTTCTTCTTTTTTTTCTTCTTTTTT
TTTTTTTTTTTTCTTCTTTTTTTTTTTCTTTTTTTTCTTTTCTTTCCTTC
CTTTTTTTTTTTCTTCTTTTCTCTTTCTCTTTTTCCTCTTTTNTCACTTT
TTTTTTT

NCGAATTTTTNNNNAAAGATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAAAAGCCTGAGGCATGGA
ACAAACAAACTCCCTCTTCCTTTTACTACGGAACTCATAAGATGGACCCA
AATAACTCAATTCCTTGGTGAAAATCAGTGAGTCTTCACAGCCTCAGCAC
AGTTTGCTTTATCTGTAGTTTCAGATCAGAAAAATAGAGAAGAGAGAAAA
AACAGTTTGTCTAAACACTAATCTGCTATGACTCAAAACCCCAATGAGTG
CAAGCCAGACTCTACTTTCCACCCACTCAGGGCTGGGCCTTTCACATTTG
GTAACAGCTGACCAGAGCATCTTCATGTAATATTGGCACTCTCGAAACTC
CCAAGGGCTGTATTGAAAAAGCTGATCCAGACCCTGTCCTCATCCAGAAC
CAGAAAAGCTGTGGGGAGATGAGTGGCAGCTGGTGAGCCAATGGGCGAGT
AGCTGATGGAGTGGAAGCTTCAGCTATGACTCACGGAGATGCAGAACAAG
GCCAAGTTGCCCTGCCCAGCTGTTCTAGAGCTTCAAAACTAAATAGAGGA
AAACCAGATGTTCACTTTTTTCAAAAATGAAATACCGACTACAAATGCAA
AATGTAATTTTACTACCCAAATGCATACCACAGAGTACTTGCAGAATCAG
AACATACTTTTGCTAGCCTTCACGGGGTGTCTAGGGGACAAATATAGAGA
AAGGACTGCATATTTCTCATCTCCTTTAAACTTCGTGCTACTCTCCAGGG
AGTATGAGACACTGTCTCGTTATGCCCACTGGTCAGCAATTATCTTGTGT
TTTCTCTATTTAGAGTTGGGAGCAAATTTATGAACATACCGCCTATTCCC
TAGCAAAAGTATTCCGTTAAATCATAGCTTAATCTGTTTTTTATGATTTT
CCCTCTCGTTTTCTATTAATGTTTTTCTCTTTTTTTATCCTAAATCCTTA
TTACTTTTAACTTTCTTTTTCCCCATTTTTCCTTTTTATCACTAACTCCT
CTTTCTCTCTATCTTATTTGTTTTTATTTCTTCTTCTCTTCTTTTGTTAT
ATTATTCTTTTTATTCCTTACTATTCTCTTTCTTATTCTTCCCTTTTCTT
GCTCCATTCATTTATCCTTCTCTTATTCTTCTCTCTTTTCTTTCTTCTCT
TTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_g20.b1 MSMg01no201_g20.b1 CHROMAT_FILE:
MSMg01no201_g20.b1 PHD_FILE: MSMg01no201_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:36 2005
         (376 letters)



>mm_chr16_45156044_45156819
          Length = 776

 Score =  700 bits (362), Expect = 0.0
 Identities = 371/374 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaatattttcaattttttttaaaaagtcacacccagctcattttcactttcttatttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aaaatattttcaattttttttaaaaagtcacacccagctcattttcactttcttatttag 680

                                                                       
Query: 61  cccaagatattagcccaggaaatgctgttccccaaaggtaaggtggttcttcctacctca 120
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tctaagatattagcccaggaaatgctgttccccaaaggtaaggtggttcttcctacctca 620

                                                                       
Query: 121 agctaatttacatagtcccttacaggcatgctcagaggctaatctaattgagataattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agctaatttacatagtcccttacaggcatgctcagaggctaatctaattgagataattcc 560

                                                                       
Query: 181 tcactagaccagaggcctagtcacagtcatagagttcatagtgcatacagacgatatcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcactagaccagaggcctagtcacagtcatagagttcatagtgcatacagacgatatcct 500

                                                                       
Query: 241 taagagcttggtttattagaagagataaacatgtaaatatgttatagaagtctattaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 taagagcttggtttattagaagagataaacatgtaaatatgttatagaagtctattaaaa 440

                                                                       
Query: 301 gaaatggaataaaaaagactatgtcctagctgcagagacagtctgaaaaagtactctctg 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 439 gaaatggaataaaaaagactatgtccaagctgcagagacagtctgaaaaagtactctctg 380

                         
Query: 361 ggagaggatggtgg 374
           ||||||||||||||
Sbjct: 379 ggagaggatggtgg 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no201_g20.g1 MSMg01no201_g20.g1 CHROMAT_FILE:
MSMg01no201_g20.g1 PHD_FILE: MSMg01no201_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:36 2005
         (568 letters)



>mm_chr16_45070139_45071106
          Length = 968

 Score = 1075 bits (556), Expect = 0.0
 Identities = 565/568 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggaactcataagatggacccaaataactcaattccttggtgaaaatcagtgagtcttca 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cggaactcataagatggacgcaaataactcaattccttggtgaaaatcagtgagtcttca 260

                                                                       
Query: 61  cagcctcagcacagtttgctttatctgtagtttcagatcagaaaaatagagaagagagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcctcagcacagtttgctttatctgtagtttcagatcagaaaaatagagaagagagaa 320

                                                                       
Query: 121 aaaacagtttgtctaaacactaatctgctatgactcaaaaccccaatgagtgcaagccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaacagtttgtctaaacactaatctgctatgactcaaaaccccaatgagtgcaagccag 380

                                                                       
Query: 181 actctactttccacccactcagggctgggcctttcacatttggtaacagctgaccagagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actctactttccacccactcagggctgggcctttcacatttggtaacagctgaccagagc 440

                                                                       
Query: 241 atcttcatgtaatattggcactctcgaaactcccaagggctgtattgaaaaagctgatcc 300
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 441 atcttcatgtaatattggcactctcgaaactcccaagggctggactgaaaaagctgatcc 500

                                                                       
Query: 301 agaccctgtcctcatccagaaccagaaaagctgtggggagatgagtggcagctggtgagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaccctgtcctcatccagaaccagaaaagctgtggggagatgagtggcagctggtgagc 560

                                                                       
Query: 361 caatgggcgagtagctgatggagtggaagcttcagctatgactcacggagatgcagaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caatgggcgagtagctgatggagtggaagcttcagctatgactcacggagatgcagaaca 620

                                                                       
Query: 421 aggccaagttgccctgcccagctgttctagagcttcaaaactaaatagaggaaaaccaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggccaagttgccctgcccagctgttctagagcttcaaaactaaatagaggaaaaccaga 680

                                                                       
Query: 481 tgttcacttttttcaaaaatgaaataccgactacaaatgcaaaatgtaattttactaccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgttcacttttttcaaaaatgaaataccgactacaaatgcaaaatgtaattttactaccc 740

                                       
Query: 541 aaatgcataccacagagtacttgcagaa 568
           ||||||||||||||||||||||||||||
Sbjct: 741 aaatgcataccacagagtacttgcagaa 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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