BAC Information

Click to search

BAC

Clone NameMSMg01-203C16
Chromosome16 (Build37)
Map Location 63,873,701 - 63,874,003
singlet/doubletsinglet
Overlap genenone
Upstream genePros1, Epha3
Downstream geneLOC100043540, Ckt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203C16.T7 (MSMg01no203_c16.b1)MSMg01-203C16.TJ (MSMg01no203_c16.g1)
ACCAG388038AG388039
length712712
length of high quality
(start - end)
316 (45 - 360)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no203_c16.b1 PHD_FILE: MSMg01no203_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:14 2005CHROMAT_FILE: MSMg01no203_c16.g1 PHD_FILE: MSMg01no203_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATAGGTACCAAAACCCAAAGCTGGAGAGATGGCTCAGTGAATAA
GAATGCTTGCTGTTCTTGCCCACCGACCAGAGTTTAGGACTCAGAATTCA
CATCAGGTGTGGATCTCCAGCTCCAGGAGATCCAACACCTTCTTCTGGCT
TCTGTGAGTACCATGCTCCTATACATAAAACCAAACACAGACATTCACAT
AGAATTCACTAATTGAAAAATAAAATACTTTGGAAAGTGACAGAACAGTA
CAAACATACTTTAAATATATTATCATGAATTTGGATTATATATTCATTTT
CCGTCAAAAATCTTTTTGTACATTGACTATGTGTCAGACACTGCTGTGGA
GGCTCTGAATAACCCCCCAAACAGAACCAGACCAAACTGGTTCCTTGTCA
CATATGCTTCACTTCCTTAATTGTATGGTGTCCTGGATGAAATAGGGTTT
TTTGGCAGAAATTTTGGTCACAGGTGATCAAGGGGTTTCCTTTGTGCTTC
TGGGTGGCTCTTATATTTATCACAGCAAAGAGCTCTGGACTTCATTGGGT
TTATGCTGACACTGTGTGACATCCGTGAAGCTTGGCATAGCACTTCATAG
GTGAAGAATAACTCCCCACCATATAAAATCTTGAGTTAGAATACTGCTAA
ACAAAAACTCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGGCACAGGAAAAACTTTGTGA
ACAGAACAACATTAGCATAAACATTAAGATTATGATTATTTAGTGGGACT
TTATGAATCTGTGAAACTTCTGTATGGCACAGAACACTGTCATTTAGATA
AACCTACAGAAGGGAAAAGATTTTAACTAACTACACATTCATTAGAGGAC
TGATATCCAAAAATGTATAAACGACTAAAATGCTAGAAGTCAGGAAAACA
AATAAACCAATTTGAAAATGGGCCATAGATATAAAACAGAGAATGCTCAT
AAGGAAAATGGTTCTTCTAGATATAAACACAATGCTTAAAAGGAGACTCA
GGTTGCTGATAATGATCCCCCCCCCCAAAAAATGGTCAACACCTGGGAAA
TCCAAATAAAAACTAATTTGAGATATCATGTTACACCTATTAGTAGAATG
GCTAAGATCAATAAAACAAATGACACTTCATCTTGGCGAGGACGTGGAGT
AAGGNAAATTCTTATTCATTTCTGCGGAAGCCCTATCTTCTACGGTCACC
GTGCAAATCCATGTTGTGCCCCCTCACTACTATGAGGTTTGTCTTACCCC
CCCTCCCTTTTCTCTACTTTCCTACTTCCCCCCTTTTACGCTTCCTTCAC
TCTCTTCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_c16.b1 MSMg01no203_c16.b1 CHROMAT_FILE:
MSMg01no203_c16.b1 PHD_FILE: MSMg01no203_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:14 2005
         (316 letters)



>mm_chr16_63873291_63874006
          Length = 716

 Score =  507 bits (262), Expect = e-148
 Identities = 296/312 (94%), Gaps = 9/312 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcataggtaccaaaacccaaagctggagagatggctcagtgaataagaatgctt 64
           ||||||||||||||| |||||| |||||||||||||||||||||||||||||||      
Sbjct: 713 gaattctcataggtaacaaaactcaaagctggagagatggctcagtgaataaga------ 660

                                                                       
Query: 65  gctgttcttgcccaccgaccagagtttaggactcagaattcacatcaggtgtggatctcc 124
             ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 --tgttcttgccca-ggaccagagtttaggactcagaattcacatcaggtgtggatctcc 603

                                                                       
Query: 125 agctccaggagatccaacaccttcttctggcttctgtgagtaccatgctcctatacataa 184
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 602 agctccaggagatccaacaccttcttctggcttctgtgggtaccatgctcctatacataa 543

                                                                       
Query: 185 aaccaaacacagacattcacatagaattcactaattgaaaaataaaatactttggaaagt 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 542 aaccaaacacagactttcacatagaattcactaattgaaaaataaaatactttagaaagt 483

                                                                       
Query: 245 gacagaacagtacaaacatactttaaatatattatcatgaatttggattatatattcatt 304
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 482 gacagaacagtacaaacatactttaaatatattatcatgaatttgaattatatattcatt 423

                       
Query: 305 ttccgtcaaaaa 316
           ||||||||||||
Sbjct: 422 ttccgtcaaaaa 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)