Query= MSMg01no204_c04.b1 MSMg01no204_c04.b1 CHROMAT_FILE:
MSMg01no204_c04.b1 PHD_FILE: MSMg01no204_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:34 2005
(679 letters)
>mm_chr16_83254637_83255717
Length = 1081
Score = 1009 bits (522), Expect = 0.0
Identities = 658/758 (86%), Gaps = 90/758 (11%)
Strand = Plus / Plus
Query: 4 ggaattctaacagagagtgccagctggtgatcctataactccattgtattgttcttctgt 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ggaattctaacagagggtgccagctggtgatcctataactccattgtattgttcttctgt 189
Query: 64 ttacttggaaagggcagccgacctcataacttaagaaataaatcttttttctaaagttga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttacttggaaagggcagccgacctcataacttaagaaataaatcttttttctaaagttga 249
Query: 124 atatcatcatccaaacagttatgttatacaaaagaaaaaa-------------------- 163
||||||||||||||||||||||||||||||||| ||||||
Sbjct: 250 atatcatcatccaaacagttatgttatacaaaa-aaaaaacaaaaaaaaaaaaacaaaca 308
Query: 164 -----------------------------------aaaacaaaacaaaacaa-------- 180
|||||||||||||||||
Sbjct: 309 aacaaacaaaaaaaaacaaaaaacaaaaaaaaaccaaaacaaaacaaaacaaacaaacaa 368
Query: 181 ----------------cgtattattaccataatgattggccctaggtgactacctaattt 224
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 acaaacaaaaaaccaacgtattattaccataatgattggccctaggtgactacctaattt 428
Query: 225 tgcttattgaacatagcaatggaatgactcagaataaattactattactaaactaaatca 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgcttattgaacatagcaatggaatgactcagaataaattactattactaaactaaatca 488
Query: 285 gtacttgactcaaccttcaacagaaatgatttttctttctgcaagtattaattaacccat 344
|||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 489 gtactttactcaaccttcaacagaaatgatttttctttctgcaggtattaa----cccat 544
Query: 345 ctactcaactggccaatgttcaaaaattaaaactcactgtagttctgaggtccagcctca 404
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 545 ctactcaactggccaatgttcaaaaagtaaaactcactgtagttctgaggtccagcctca 604
Query: 405 gcatgaggagggtcctcagaaaggagggaatgggaatggtgtggcttcaataatgactca 464
|||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 605 gcatgacgagggtcctcagaaaggagggaatgggaattgtgtgtcttcaataatgactca 664
Query: 465 gagtcagtactagatgcaagctgcaagtttaggtactctctgtgccctgatgattctcag 524
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gagtcagtactagatgcaagcagcaagtttaggtactctctgtgccctgatgattctcag 724
Query: 525 tattctttattcttcgacttcagctaaagctta---gtttaatagcttaataaccagaga 581
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 725 tattctttattcttcgacttcagctaaagcttaatagtttaatagcttaataaccagaga 784
Query: 582 aagcctgaacacagtcttttacttactaaagctatatcattgaggcttttttgtacataa 641
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 785 aagcctgaacacagtcttttacttactaaagctatatcattgaggcttttt-gttcataa 843
Query: 642 ttatcatgaattcttagattt-acataaacactatgag 678
|||||| ||||||||| |||| ||||||||||||||||
Sbjct: 844 ttatcaagaattctta-attttacataaacactatgag 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1081
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1071
Effective search space: 716499
Effective search space used: 716499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no204_c04.g1 MSMg01no204_c04.g1 CHROMAT_FILE:
MSMg01no204_c04.g1 PHD_FILE: MSMg01no204_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:34 2005
(650 letters)
>mm_chr16_83325200_83326250
Length = 1051
Score = 1174 bits (607), Expect = 0.0
Identities = 640/653 (98%), Gaps = 7/653 (1%)
Strand = Plus / Minus
Query: 1 aggtgtccctaaaaagaggaatggatacagaaaatgtggtctttcaacttgttgtttaag 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 702 aggtgtccctaaaaagaggaatggatacagaaaatgtggtctttcaacatgttgtttaag 643
Query: 61 taaaaggaatcactggtgttactaataatgtgggctcccatacatcaaagtgtttaaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 taaaaggaatcactggtgttactaataatgtgggctcccatacatcaaagtgtttaaact 583
Query: 121 actgagatttaacataaaaagaatgatttcatcccaaatattattttatctcagtgtagc 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 actcagatttaacataaaaagaatgatttcatcccaaatattattttatctcagtgtagc 523
Query: 181 atttgtgaaggtagaaatggaatctgtgtagcattatggcatattgaggattacttcatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 atttgtgaaggtagaaatggaatctgtgtagcattatggcatattgaggattacttcatt 463
Query: 241 ttgcttcattgatttcatgattttgagacaaattccatatagtaagaaatgattagttct 300
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 462 ttgcttcattgttttcatgattttgagacaaattccatatagtaataaatgattagttct 403
Query: 301 tgaaaccatttgtcatttttgtcagcttaaaagtttattattaatgacactttaaa-ttt 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 402 tgaaaccatttgtcatttttgtcagcttaaaagtttattattaatgacactttaaatttt 343
Query: 360 tttaattagcaagctgaatatgattcttagccaagctttttagaattcttttctggagga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tttaattagcaagctgaatatgattcttagccaagctttttagaattcttttctggagga 283
Query: 420 gaattcagcaattcattgtctaatgttaacttctcagcactgaaacaaaacaaaacaaaa 479
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 282 gaattcagcaattcattgtctaatgttaacttctcagaactgaaacaaaac--aacaaaa 225
Query: 480 caaaa--caaaaaaaaccatacagctaacataggactaagcaggctatactaagggatgt 537
||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 224 caaaaaccaaaaaaa--catacagctaacataggactaagcaggctatagtaagggatgt 167
Query: 538 atttatataatgacatatgtgcacacaatgacagctagtggaaaaggaggacatacattt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 atttatataatgacatatgtgcacacaatgacagctagtggaaaaggaggacatacattt 107
Query: 598 gattacctttttctttggctgacataattatatcttctgtctcatccccaaga 650
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 gattacctttttctttggctgacataattatatcttctgtctcatccccaaga 54
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1051
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1041
Effective search space: 666240
Effective search space used: 666240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
