Query= MSMg01no205_n11.b1 MSMg01no205_n11.b1 CHROMAT_FILE:
MSMg01no205_n11.b1 PHD_FILE: MSMg01no205_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:48 2005
(344 letters)
>mm_chr16_9465219_9465962
Length = 744
Score = 389 bits (201), Expect = e-112
Identities = 253/273 (92%), Gaps = 8/273 (2%)
Strand = Plus / Plus
Query: 2 gatgagaaa--gagtggatgcattctagcatttattatctcattcagtggacaccataag 59
||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 200 gatgaaaaaatgagtggatgcattctagcatttattatctcattcagtggacagaataag 259
Query: 60 cctcacagtcatctaacatcaccgtgtgcatgagaatcctgagtccaaactcagctatcc 119
||||||||||| |||||||||| |||||||||||||||| ||||||||| ||||||| |
Sbjct: 260 cctcacagtcacctaacatcactgtgtgcatgagaatcccgagtccaaaatcagctaact 319
Query: 120 atctctatgtcctaaattttaaaatctgcctgcctgcctgcctgtgtctgtgtctgt--c 177
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 320 atctctatgtcctaaattttaaaatctgcctgcctgcctgcctgtgtctgtgactgtgtc 379
Query: 178 tgtgtctgtgtctgtgtctgtgtctgtgtctgtgt--ctgtgtctgtgtctgtgtctgtg 235
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 380 tgtgtctgtgtctgtgtctgtgtctgtgtctgtgtgtctgtgtctgtgtctgtgtctgtg 439
Query: 236 tctgtgtctgtgtccctgtc--tctgtgtctgt 266
|||||||||||||| |||| |||||||||||
Sbjct: 440 tctgtgtctgtgtctgtgtcggtctgtgtctgt 472
Score = 151 bits (78), Expect = 6e-41
Identities = 102/114 (89%), Gaps = 12/114 (10%)
Strand = Plus / Plus
Query: 161 ctgtgtctgtgtctgtctgtgtc--tgtgtctgtgtc--tgtgtctgtgtc--tgtgtct 214
||||||||||| |||||||||| |||||||||||| |||||||||||| |||||||
Sbjct: 627 ctgtgtctgtg--tgtctgtgtctgtgtgtctgtgtctgtgtgtctgtgtctgtgtgtct 684
Query: 215 gtgtctgtgtctgtgtctgtgtctgtgt--ctgtgtccctgtctctgtgtctgt 266
|||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 685 gtgtctgtgtctgtgtctgtgtctgtgtgtctgtgtc--tgtctctgtgtctgt 736
Score = 147 bits (76), Expect = 9e-40
Identities = 101/112 (90%), Gaps = 8/112 (7%)
Strand = Plus / Plus
Query: 161 ctgtgtctgtgtctgtctgtgtctgtgtctgtgtctgtgtctgtgt--ctgtgtctgtgt 218
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 487 ctgtgtctgtgtctgt--gtgtctgtgtctgtgtctgtgtctgtgtgtctgtgtctgtgt 544
Query: 219 --ctgtgtctgtgtctgtgt--ctgtgtctgtgtccctgtctctgtgtctgt 266
|||||||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct: 545 gtctgtgtctgtgtctgtgtgtctgtgtctgtgtctgtgtctgtgtgtctgt 596
Score = 145 bits (75), Expect = 3e-39
Identities = 100/111 (90%), Gaps = 8/111 (7%)
Strand = Plus / Plus
Query: 162 tgtgtctgtgtctgtctgtgtctgtgtctgtgtc--tgtgtctgtgtctgtgtctgtgtc 219
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 528 tgtgtctgtgtctg--tgtgtctgtgtctgtgtctgtgtgtctgtgtctgtgtctgtgtc 585
Query: 220 tgtgt--ctgtgtctgtgtctgtgt--ctgtgtccctgtctctgtgtctgt 266
||||| |||||||||||||||||| ||||||| ||| |||||||||||
Sbjct: 586 tgtgtgtctgtgtctgtgtctgtgtgtctgtgtctgtgtgtctgtgtctgt 636
Score = 143 bits (74), Expect = 1e-38
Identities = 103/116 (88%), Gaps = 10/116 (8%)
Strand = Plus / Plus
Query: 161 ctgtgtc--tgtgtc--tgtctgtgtctgtgtc--tgtgtctgtgtc--tgtgtctgtgt 212
||||||| |||||| |||||||||||||||| |||||||||||| |||||||||||
Sbjct: 493 ctgtgtctgtgtgtctgtgtctgtgtctgtgtctgtgtgtctgtgtctgtgtgtctgtgt 552
Query: 213 ctgtgtc--tgtgtctgtgtctgtgtctgtgtctgtgtccctgtctctgtgtctgt 266
||||||| ||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 553 ctgtgtctgtgtgtctgtgtctgtgtctgtgtctgtgtgtctgtgtctgtgtctgt 608
Score = 143 bits (74), Expect = 1e-38
Identities = 103/116 (88%), Gaps = 10/116 (8%)
Strand = Plus / Plus
Query: 161 ctgtgtctgtgtctgtctgtgtc--tgtgtctgtgtc--tgtgtctgtgtc--tgtgtct 214
||||||||||| |||||||||| |||||||||||| |||||||||||| |||||||
Sbjct: 613 ctgtgtctgtg--tgtctgtgtctgtgtgtctgtgtctgtgtgtctgtgtctgtgtgtct 670
Query: 215 gtgtc--tgtgtctgtgtctgtgtctgtgtctgtgtccctgtctctgtgtctgtct 268
||||| |||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 671 gtgtctgtgtgtctgtgtctgtgtctgtgtctgtgtctgtgtgtctgtgtctgtct 726
Score = 141 bits (73), Expect = 5e-38
Identities = 102/115 (88%), Gaps = 10/115 (8%)
Strand = Plus / Plus
Query: 162 tgtgtctgtgtc--tgtctgtgtc--tgtgtctgtgtc--tgtgtctgtgtctgtgtc-- 213
|||||||||||| |||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 502 tgtgtctgtgtctgtgtctgtgtctgtgtgtctgtgtctgtgtgtctgtgtctgtgtctg 561
Query: 214 tgtgtctgtgtctgtgtctgtgtctgtgt--ctgtgtccctgtctctgtgtctgt 266
||||||||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct: 562 tgtgtctgtgtctgtgtctgtgtctgtgtgtctgtgtctgtgtctgtgtgtctgt 616
Score = 139 bits (72), Expect = 2e-37
Identities = 97/108 (89%), Gaps = 8/108 (7%)
Strand = Plus / Plus
Query: 161 ctgtgtctgtgtctgtctgtgtc--tgtgtctgtgtctgtgtc--tgtgtctgtgtctgt 216
||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 519 ctgtgtctgtg--tgtctgtgtctgtgtgtctgtgtctgtgtctgtgtgtctgtgtctgt 576
Query: 217 gtctgtgtctgtgt--ctgtgtctgtgtctgtgtccctgtctctgtgt 262
|||||||||||||| |||||||||||||||||| |||| |||||||
Sbjct: 577 gtctgtgtctgtgtgtctgtgtctgtgtctgtgtgtctgtgtctgtgt 624
Score = 139 bits (72), Expect = 2e-37
Identities = 97/108 (89%), Gaps = 8/108 (7%)
Strand = Plus / Plus
Query: 161 ctgtgtctgtgtctgtctgtgtctgtgtctgtgtctgtgtctgtgt--ctgtgtctgtgt 218
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 547 ctgtgtctgtgtctgt--gtgtctgtgtctgtgtctgtgtctgtgtgtctgtgtctgtgt 604
Query: 219 ctgtgt--ctgtgtctgtgt--ctgtgtctgtgtccctgtctctgtgt 262
|||||| |||||||||||| |||||||||||| |||| |||||||
Sbjct: 605 ctgtgtgtctgtgtctgtgtgtctgtgtctgtgtgtctgtgtctgtgt 652
Score = 136 bits (70), Expect = 3e-36
Identities = 103/118 (87%), Gaps = 12/118 (10%)
Strand = Plus / Plus
Query: 161 ctgtgtc--tgtgtc--tgtctgtgtc--tgtgtctgtgtctgtgtctgtgtctgtgt-- 212
||||||| |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 533 ctgtgtctgtgtgtctgtgtctgtgtctgtgtgtctgtgtctgtgtctgtgtctgtgtgt 592
Query: 213 ctgtgtctgtgtctgtgt--ctgtgtctgtgt--ctgtgtccctgtctctgtgtctgt 266
|||||||||||||||||| |||||||||||| ||||||| ||| |||||||||||
Sbjct: 593 ctgtgtctgtgtctgtgtgtctgtgtctgtgtgtctgtgtctgtgtgtctgtgtctgt 650
Score = 136 bits (70), Expect = 3e-36
Identities = 96/108 (88%), Gaps = 10/108 (9%)
Strand = Plus / Plus
Query: 161 ctgtgtctgtgtctgtctgtgtc--tgtgtctgtgtc--tgtgtctgtgtctgtgtctgt 216
||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 641 ctgtgtctgtg--tgtctgtgtctgtgtgtctgtgtctgtgtgtctgtgtctgtgtctgt 698
Query: 217 gtctgtgtctgtgt--ctgtgtctgtgtctgtgtccctgtctctgtgt 262
|||||||||||||| |||||||||| |||||||| ||| |||||||
Sbjct: 699 gtctgtgtctgtgtgtctgtgtctgtctctgtgtc--tgtgtctgtgt 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 235
Number of extensions: 58
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 13
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| |
