BAC Information

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BAC

Clone NameMSMg01-206J14
Chromosome16 (Build37)
Map Location 53,877,658 - 53,878,131
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043430, LOC667895
Downstream geneLOC433027, LOC100043442, LOC100043449, LOC667927
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206J14.T7 (MSMg01no206_j14.b1)MSMg01-206J14.TJ (MSMg01no206_j14.g1)
ACCAG390155AG390156
length695745
length of high quality
(start - end)
289 (126 - 414)470 (77 - 546)
definitionCHROMAT_FILE: MSMg01no206_j14.b1 PHD_FILE: MSMg01no206_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:49 2005CHROMAT_FILE: MSMg01no206_j14.g1 PHD_FILE: MSMg01no206_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTTTTCTCTGAGCCCCATTTTTTAATGGGGTTGTTTGAT
TTTCTGAAGTCCACCTTCTTGAGCCCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTCACATTAAA
GCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGAATGCAGGGATG
GTTTAATATAGGAAAATCCATCAATGTAATCCACTATATAAACAAACTCA
AAGACAAAAACCACATGATCATCTCGCTGGATGCAGAAAAAGCATTTGAC
AAGATCCAACACCCCACCCCCGATAAAAGTTCTGGAAAGATCAGGATTTC
CAGGCCCATACCTAAACATGATTAAAGCAATCTACCGCAAACCAGTAGTC
CACATCCAAGTTAAATGGAGAGAAATTTGGAAGCAATCCCCCCTTAAAAT
TCTGGAATAAGACCAAGGTTGGCCCACTTTTCTCCCCTTACTTTTTTCAA
ACATATGAACTTTGGAAGTCTTTTATCCCCGAACCTATTTTTTACTTATT
CAATAGTGGAACACCCCGGGGGGGTATTCCCATAATTTTGGTAAA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTTACAGCTAAATTAAATTCTAG
TTGGATAGTAATTTTTGCTTTCCTCGCACAAACTAGGCAATGTCCCACTT
TCAAACTAATCATTTTCCTCCTAGTATCCTTTTAAATAAAATGGACCAAA
ATTGCCAAATATAATGTACTGGCAAACAGCATTTAACTGTGGACATTTCA
TTAGTATTGTTTCCTTGTTTTTATTGTTTACTTAAAAAATAAATCTTGAA
ACAGATGACTTTTATGCCATTTGAAATATTAATATCAGTTTTGTTTTCAT
TTATATTACATTCAGAAAGTCTTTTTCAATAAAACTCCACATTTTTCTTT
AAAATGCTTTATTTAAAACCCCACTTATACTAGAAGTGACATATCACATA
CATTAACATGTACATACTACTCATATTTTCTATAAATACAAGACTTTCAA
GTAAAGACTTATTATATATATATATTATATATATATACACACATAATAAC
TGTTTAAAACCTCTCCATTGGAAAACTTTAAATAAAATATTATATTAATA
ACTTCAATGCTATAAATTTGATAGCATTTGCAGATAATTATTGTTTTCCT
TCTTAAAAACAGAAAAATATAAATTTGGTACATTTTTTTCATCATAAAAA
TGTAGGCCCATTGCAAACTTTATATCGCCCCAGTACAGGTTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_j14.g1 MSMg01no206_j14.g1 CHROMAT_FILE:
MSMg01no206_j14.g1 PHD_FILE: MSMg01no206_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:49 2005
         (470 letters)



>mm_chr16_53877458_53878325
          Length = 868

 Score =  832 bits (430), Expect = 0.0
 Identities = 462/480 (96%), Gaps = 16/480 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttacagctaaattaaattctagttggatagtaatttttgctttcctcgcacaaactag 60
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 201 tgttacagctaaattaaattctagttggatagtaatttttgctttcct-g-acaaactag 258

                                                                       
Query: 61  gcaatgtcccactttcaaactaatcattttcctcctagtatccttttaaataaaatggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gcaatgtcccactttcaaactaatcattttcctcctagtatccttttaaataaaatggac 318

                                                                       
Query: 121 caaaattgccaaatataatgtactggcaaacagcatttaactgtggacatttcattagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 caaaattgccaaatataatgtactggcaaacagcatttaactgtggacatttcattagta 378

                                                                       
Query: 181 ttgtttccttgtttttattgtttacttaaaaaataaatcttgaaacagatgacttttatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttgtttccttgtttttattgtttacttaaaaaataaatcttgaaacagatgacttttatg 438

                                                                       
Query: 241 ccatttgaaatattaatatcagttttgttttcatttatattacattcagaaagtcttttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ccatttgaaatattaatatcagttttgttttcatttatattacattcagaaagtcttttt 498

                                                                       
Query: 301 caataaaactccacatttttctttaaaatgctttatttaaaacccc----acttatacta 356
           ||||||||||||| ||||||||||||||||||||||||||||        | ||||||||
Sbjct: 499 caataaaactccaaatttttctttaaaatgctttatttaaaa----ttaaatttatacta 554

                                                                       
Query: 357 gaagtgacatatcacatacattaacatgtacatactactcatattttctataaatacaag 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gaagtgacatatcacatacattaacatgtacatactactcatattttctataaatacaag 614

                                                                       
Query: 417 actttcaagtaaagacttattatatatatatat------tatatatatatacacacataa 470
           |||||||||||||||||||||||||||||||||      |||||||||||||||||||||
Sbjct: 615 actttcaagtaaagacttattatatatatatatatatattatatatatatacacacataa 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 868
Length adjustment: 10
Effective length of query: 460
Effective length of database: 858
Effective search space:   394680
Effective search space used:   394680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)