BAC Information

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BAC

Clone NameMSMg01-209E04
Chromosome16 (Build37)
Map Location 23,503,741 - 23,504,053
singlet/doubletsinglet
Overlap geneMasp1
Upstream geneDgkg, LOC671242, LOC666459, Crygs, Tbccd1, Dnajb11, Ahsg, Fetub, Hrg, Kng2, LOC624311, LOC666486, LOC666489, Kng1, LOC666493, Eif4a2, Rfc4, Adipoq, LOC100043541, EG625835, BC106179, St6gal1, Rtp1
Downstream geneLOC100043018, Rtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik, Lpp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209E04.T7 (MSMg01no209_e04.b1)MSMg01-209E04.TJ (MSMg01no209_e04.g1)
ACCAG391853AG391854
length721705
length of high quality
(start - end)
319 (45 - 363)285 (58 - 342)
definitionCHROMAT_FILE: MSMg01no209_e04.b1 PHD_FILE: MSMg01no209_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:20 2005CHROMAT_FILE: MSMg01no209_e04.g1 PHD_FILE: MSMg01no209_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGCCAGGCGTCATATAGTGAGTTCCAGGATGAGAGAGCTACAGA
GTGAGACAACATTTTCTCAACCAATTAACAGCTTTCTAAATAAAAACAAA
TAAATAAGACGATGACTCATCTTTATTCCTGTGCAACATTTTTAAAGCTC
TGGTTTACTTGTTTTTAATCATGAGCATGGAATGAGTGCAACTCACAGAG
ACATCACAGTTTCAAGGGGAGAGAGGTCATATGAATTCTGCAAAGGCTAC
ACTGCCTATGTAGGAAACCTGATAAAATTTACATGTCTTGACTTCCAACT
CTGGTCAAATATTTATATCCAGCCCCTCCCTCAATGCTGAGTTGAAAAAG
ATAGTTGAAGTGAACACTTTTTATTTCCTAGGTGGGGAAACTGAGTCTGG
TTTTAAGTTATATCATAATGGCCCAGGTGTACTGCTCTCCCCAGGATAGT
GGTCTTATCTTACTTTCTTTTTTTCAGCTAACCACAGTAAAACCTTTTAA
CGGAGCTTGACAATACCACAAGAAGGTCCTGTCTCTGTGTAAAGGGCAGA
CACCATAAAGAATGAGGGGGCCTGATAAAGACCTCCTAGGTCCTGAGAGT
CTGTAGCTGCTACTGCCGCCAGGAAGGATGGCGAACTTAAGAGATCAGCA
TGTGCCAGGACAGAAAAATAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
ATAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTTNCTATTT
ATACCCCCACCCCATGCCCNAANTGGTAAGAAGGACACATGCTCCACTAT
GGTCATAGCAAACTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACGATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGCGAGGTAACACTTTTCCAAA
GGAACTCACACAGTATGTACTCACTGATAAGCGGATATTAGCCCCCAACC
TAGGATACCCAAGATATAAGATACAATTTGCTAAACACCTGAAATTCCAG
GAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_e04.b1 MSMg01no209_e04.b1 CHROMAT_FILE:
MSMg01no209_e04.b1 PHD_FILE: MSMg01no209_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:20 2005
         (319 letters)



>mm_chr16_23503537_23504255
          Length = 719

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggccaggcgtcatatagtgagttccaggatgagagagctacagagtgagaca 64
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggccaggcgtcatatggtgagttccaggatgagagagctacagagtgagaca 264

                                                                       
Query: 65  acattttctcaaccaattaacagctttctaaataaaaacaaataaataagacgatgactc 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acattttctcaacaaattaacagctttctaaataaaaacaaataaataagacgatgactc 324

                                                                       
Query: 125 atctttattcctgtgcaacatttttaaagctctggtttacttgtttttaatcatgagcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atctttattcctgtgcaacatttttaaagctctggtttacttgtttttaatcatgagcat 384

                                                                       
Query: 185 ggaatgagtgcaactcacagagacatcacagtttcaaggggagagaggtcatatgaattc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaatgagtgcaactcacagagacatcacagtttcaaggggagagaggtcatatgaattc 444

                                                                       
Query: 245 tgcaaaggctacactgcctatgtaggaaacctgataaaatttacatgtcttgacttccaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgcaaaggctacactgcctatgtaggaaacctgataaaatttacatgtcttgacttccaa 504

                        
Query: 305 ctctggtcaaata 317
           |||||||||||||
Sbjct: 505 ctctggtcaaata 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)