BAC Information

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BAC

Clone NameMSMg01-209F06
Chromosome16 (Build37)
Map Location 29,574,757 - 29,658,188
singlet/doubletdoublet
Overlap geneOpa1
Upstream geneFgf12, 1600021P15Rik, EG666717, Hrasls, Atp13a5, Atp13a4
Downstream geneGm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209F06.T7 (MSMg01no209_f06.b1)MSMg01-209F06.TJ (MSMg01no209_f06.g1)
ACCAG391893AG391894
length724732
length of high quality
(start - end)
316 (45 - 360)277 (78 - 354)
definitionCHROMAT_FILE: MSMg01no209_f06.b1 PHD_FILE: MSMg01no209_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:26 2005CHROMAT_FILE: MSMg01no209_f06.g1 PHD_FILE: MSMg01no209_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,657,879 - 29,658,188)(29,574,757 - 29,575,033)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTTACCTACCTCAGTGCCCATTCAGAGAAAGGGGTGGGACAGGGA
ACAAGAGCTGCTCGGAGGCCAAGGAGAGTTTGGGGGTCGCACTACATTAC
AAGATTTGACAGGCCTTTGCCAGCCTTCAGTTTCTTTGTATCTTTTACAT
AATGGAGCGACACAAACTGAGCAGCCGTGATCCGTGCTGCCGCCCTAGCT
CGGAGCACCCTCTTTGCAAATGCTAATAGTATTGCAGCATCCTGTCACCC
GCTTACACAACAAAAGGATGTTGATTTTCACATGAACCAGAACAGTCGCA
TTGTACACTTTTTTTTTACCCCCTCCCCCCATCTGCGCATCAAAAGCGCA
GCCAATCAGAGTACACCGCTGAAGAACAGAACAAAAGGCGGTGCCCATGG
GGAGAACGTCCCAGCCCTAATGCCTCACGCCACATGAATAACATTACACT
CTATGATCCTGATTCAGCTAGGACTATAGTAATTAGTATAACTATGCAAG
AATGCTCATGTGCCCTGATGTTCGGAATGAGTTCATATTAGAGGGAGTGG
CTTTGCGTTTATGCTGATAGCCTCTGAGTATATCTGAAAGACATATGAGC
CTTGGTAGGCAATAACTGTCACTTCTCAATTTAGGTTTGATAAACTTGAC
GTCCTTCAAAGCTCGATTACCTTG
TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTC
AAACTCAGAAATCCACCTGCCTCTGCCTCCCAACCTCTCTCTACCTCTGC
TGGGATTAAAGGTATGCGCCACCACGCCCAGCTGAATTTACATTTTTTAT
GGTATTACTTTTTGTGGCTTAAGAACTGTTTGACTATTCACAGGTTACTA
ATAGGTTTTCTAACATTGTTTCATTCTTCAATTCTTTTATTCTTGCTTTT
ATACTTACAATTATATCCCAGATAATATCATTTTTGTGCATACGCACTAA
TTTTGTATATGGTGTGTTTATCTCTCCCCCCCCTCGCAAGCAGTGGGGGG
GGTATTTTTTTCCCACAGGGACCCCCACTTATTCAATTACCCCTTTGAGA
GCCCCTGGAAACCTTTTCTTCTCCATTAAATTGCTTTGGTGCCTCTCGGT
ATACCTTTTTTACTATTGTGCCTATTCCCCCTGTTTATGTTATCACATGT
TTGACATTTATTCTCCTCCCGCTTACTCCTTGTTCTTACCCCCTACAACA
TGCTGTCTGGATCATGTTCTTTTTATTCTCTCTTTCCCTTACTTTATCCC
CCCCCTCCTTTTTTTTATTCCCCCTCTTCTCCACCTATTTTTCCTCCCCT
TTTTTTTTTTTCCCCCTCCCCCTCCTTTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_f06.b1 MSMg01no209_f06.b1 CHROMAT_FILE:
MSMg01no209_f06.b1 PHD_FILE: MSMg01no209_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:26 2005
         (316 letters)



>mm_chr16_29657675_29658390
          Length = 716

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttacctacctcagtgcccattcagagaaaggggtgggacagggaacaagagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcatttacctacctcagtgcccattcagagaaaggggtgggacagggaacaagagc 455

                                                                       
Query: 65  tgctcggaggccaaggagagtttgggggtcgcactacattacaagatttgacaggccttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tgctcggaggccaaggagagtttgggggtcgcactacattacaagatttgacaggccttt 395

                                                                       
Query: 125 gccagccttcagtttctttgtatcttttacataatggagcgacacaaactgagcagccgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 394 gccagccttcagtttctttgtatcttttacataatggagcgacacaaactgagcagccgg 335

                                                                       
Query: 185 gatccgtgctgccgccctagctcggagcaccctctttgcaaatgctaatagtattgcagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gatccgtgctgccgccctagctcggagcaccctctttgcaaatgctaatagtattgcagc 275

                                                                       
Query: 245 atcctgtcacccgcttacacaacaaaaggatgttgattttcacatgaaccagaacagtcg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 274 atcctgtcacccgcttacacaacaaaaggatgttgattttcacatgaaccagaacagccg 215

                     
Query: 305 cattgtacac 314
           ||||||||||
Sbjct: 214 cattgtacac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no209_f06.g1 MSMg01no209_f06.g1 CHROMAT_FILE:
MSMg01no209_f06.g1 PHD_FILE: MSMg01no209_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:26 2005
         (277 letters)



>mm_chr16_29574557_29575233
          Length = 677

 Score =  528 bits (273), Expect = e-154
 Identities = 276/277 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgtagaccaggctggcctcaaactcagaaatccacctgcctctgcctcccaacctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtagaccaggctggcctcaaactcagaaatccacctgcctctgcctcccaacctc 260

                                                                       
Query: 61  tctctacctctgctgggattaaaggtatgcgccaccacgcccagctgaatttacattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctctacctctgctgggattaaaggtatgcgccaccacgcccagctgaatttacattttt 320

                                                                       
Query: 121 tatggtattactttttgtggcttaagaactgtttgactattcacaggttactaataggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatggtattactttttgtggcttaagaactgtttgactattcacaggttactaataggtt 380

                                                                       
Query: 181 ttctaacattgtttcattcttcaattcttttattcttgcttttatacttacaattatatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctaacattgtttcattcttcaattcttttattcttgcttttatacttacaattatatc 440

                                                
Query: 241 ccagataatatcatttttgtgcatacgcactaatttt 277
           ||||||||||||||||||||||||||| |||||||||
Sbjct: 441 ccagataatatcatttttgtgcatacgtactaatttt 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)