BAC Information

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BAC

Clone NameMSMg01-210N20
Chromosome16 (Build37)
Map Location 91,734,010 - 91,734,295
singlet/doubletsinglet
Overlap geneItsn1
Upstream geneMrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653
Downstream geneAtp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210N20.T7 (MSMg01no210_n20.b1)MSMg01-210N20.TJ (MSMg01no210_n20.g1)
ACCAG392821AG392822
length902746
length of high quality
(start - end)
---289 (80 - 368)
definitionCHROMAT_FILE: MSMg01no210_n20.b1 PHD_FILE: MSMg01no210_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:34 2005CHROMAT_FILE: MSMg01no210_n20.g1 PHD_FILE: MSMg01no210_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAAGAAGGAAAAAAGAGAGGAAAAGAAGAAAAAAATAAAAAGAAGAGG
GGGGAAAAAGAGGAGGAGGTGCAAGAAGAGGGGAAGAGGAGGGATTAGAA
AAAAGAGGATAANATGATAAAAAAAAAGAAAAGAGAAAGAAAGAGTATTA
CGCCAAGAAGAGGGGGGGGAAGGGAGAGAGGGAGAGGAGATGGAGAGAGA
AGAAGAGAGGAGGAGAGAAGAGAAAAAAGAGAGGGGAAGGAAATGATAAT
GAGGAGAGAAGGAAGAGAGGAGAAGGAGAAATAAGATATTTTAAAAAAAA
AGAAAAAGAAGAAGAGGAAAAAGGAAGAGAGGAGAGAAAAAAGAAAAGAA
AAAGAGGAGGAAATATGGTGGTTTGGAGAGAAGGAAAAAGAAGAGAAAGG
AAAAAGAAAAATAGAGGTGGGAGTTAAAAGAACCAGGNGGAGCGGGAGAG
AGAGAGAAGAGGGGGGGGGGGGGGGGGGGGGCCCCCAAAAACCNCGAAAG
GGNAAAAAGGGGGCCCCCGCCCCCGGGGGNCNCNCCCCCNGGCGCCGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGG
CGGGGAGGGGGGGGGAGGGGGAGGGGNGCGCCCGGGGAGGGGGGGGGGGG
GAGAAGAAGGGGGGGGGAGAGAGGAAAAAGGGGAGAGAAGAAGGAAAGAG
AGAAAGAACCGGGAGAGAGAGGAAGAGAGAGAGAGAAAGAGAGAAGAAGG
GAAATGGGGAGAGAAAAAAGAAAGAAGGGGAATTATTTTATTTGTGGAGA
GAGAAAGGGAGGAGAAGAGGATGATAGAGGAGGAGGAGGAAAGAAGAGAA
GGGAAGAGAAAAAAGAGAAATAGAGGGGAGGGAAGGAGGAAGAGAAAGGA
GG
ACAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCACTAGCCACAATAGATT
ATTTTTTAACTTGTTTTCTCAGCATTTAAAAAAACAAACAAAAAAACAAA
AACCAAAAACAAAACCCTTCCATGTCTATAATATAAATTTAATAGCTGGA
TAATATATCACTTTATGGATCTGTGAGAATTTGGCTAGTTTATTAGACAT
TAGTATAGTGTGTCATGACAGACTCTCCCTAATAGCATTTCTTTTTAACT
TATTTTTGAAATTTTACTAATTTTCATAAAATTTTAAGTAGGTGTTTTGT
CCGTAAATATTTTTTCTAAATCACGGTACCANACGGTGATGGCAAGGAGG
CCAGAAAAGGGACTGCACCCCCAGAAAAAAAATTACTCATGGTTGTAAGC
CACCACGTGGGTGCTAGGGATTGAATCCCGGGTCACCTGGAAAAGGAGTC
AGCCTCTCCAGTCTGCTACGGGCATTTCTTAAGGATTTTTTCCCCCTTTT
AGATGTGTTTCTAGGGAGATGGCTCACTGTATAAAGAGCTTTCAGCCCAC
GCCCGAAGAACTGATTTTTGATTCCCAAACCATACATAACGCTTTTATGC
TGTACTTGCTTACTTTATATTCCTCTTATACTTTTTTTTCTTCAACCCCT
TATACATTTATTTTGTATTTCTCATAATTTTTCCTCAAATCAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_n20.g1 MSMg01no210_n20.g1 CHROMAT_FILE:
MSMg01no210_n20.g1 PHD_FILE: MSMg01no210_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:34 2005
         (289 letters)



>mm_chr16_91733810_91734498
          Length = 689

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcactagccacaatagattattttttaacttgttttctcagcatttaaaaaaacaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgcactagccacaatagattattttttaacttgttttctcagcatttaaaaaaacaaac 260

                                                                       
Query: 61  aaaaaaacaaaaaccaaaaacaaaacccttccatgtctataatataaatttaatagctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaaacaaaaaccaaaaacaaaacccttccatgtctataatataaatttaatagctgg 320

                                                                       
Query: 121 ataatatatcactttatggatctgtgagaatttggctagtttattagacattagtatagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 ataatatatcactttatggatctgtgagaatttggctagtttattagacattagtgtagt 380

                                                                       
Query: 181 gtgtcatgacagactctccctaatagcatttctttttaacttatttttgaaattttacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtcatgacagactctccctaatagcatttctttttaacttatttttgaaattttacta 440

                                                         
Query: 241 attttcataaaattttaagtaggtgttttgtccgtaaatatttttt 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attttcataaaattttaagtaggtgttttgtccgtaaatatttttt 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)