BAC Information

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BAC

Clone NameMSMg01-211N23
Chromosome16 (Build37)
Map Location 69,471,480 - 69,509,901
singlet/doubletdoublet
Overlap genenone
Upstream geneEG626609
Downstream geneSpeer2, EG664930, Gbe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211N23.T7 (MSMg01no211_n23.b1)MSMg01-211N23.TJ (MSMg01no211_n23.g1)
ACCAG393435AG393436
length785719
length of high quality
(start - end)
247 (45 - 291)643 (77 - 719)
definitionCHROMAT_FILE: MSMg01no211_n23.b1 PHD_FILE: MSMg01no211_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:23 2005CHROMAT_FILE: MSMg01no211_n23.g1 PHD_FILE: MSMg01no211_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,471,480 - 69,471,692)(69,509,289 - 69,509,901)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTGGATTTTAATGACTAGGCATAAACCTGGCAATATCCACTAACAAAAC
AAGCAATCTCTCTACCAGGCACGACCAAATTGTTGTTTTGTATAAGAGAA
TTGTAAGAAAAATGAAATATATTGGAAAAAATAGAAAGAAGGAAAGAAAG
AAAGAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGCCCCCCCTC
CNCCCCCNCCNCCCCNCCCCCCNCCCCCTTTTTTCCCNTTCCTCTTTCCC
CTCCCCCCCTTTTNTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCNNNT
TTCCCCTTCTTTCCCCCCTTTTTCCCTTTCCCCCCCCCCAAAAATAAAAA
TACACCCCTTTCCCCTCCCCCCCCCTTTCTTCCCCCTCCTCCCCTTTTTT
TCCCCCTCCTCCTTACCACCCCTCTTAATTCCCCCTCCCCCCCCACCATT
TCCCCCCCCCTATTTTCTTCCCCCCCCCCCCCCCCCCCCTTTTCCCCCCC
CCCCCCCCCCTTTTTTTCTCCTATCCCACCCCCCCCTCCCCCCCCTCTTT
TTTTCTTCCCCCCCCCCCCCCCTTTTTTTTTTTTTTCCTCCTCTCCCCCC
CCCCTTTTTTTTTTTCCCCCCCTTTTCTTTTTTTTTTTTTTTTACCCCTT
CCCCTTTTTCCCCCCCCCCCCCTTTTATTTCCCCC
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCTACATATGTATCTCTGGCC
TTTATTCCCTCCTGGATATTTCATACAAATTCTGTGGTGTCTTACAGTTA
GTATTTTAATATCAAACAAGTATCTTAATATTTTTAATAGTTATTATGTA
GCTCCATAAAGTTTTTCAGTTAATAGTTTTATTTAGTAGAAAAGTGAGGT
CATGATGTGCTTATTACATATAATTAAGATCAGAACATTCTCTAGTGATT
TAAGTACTAAATATATAAAAATTTAAACAGAGAAGTGTAAGAAACATAAA
TGAAAGAATTACTAAAATTGAGGTTAAGTTTTAAAAAATTCCAAATTTGG
AAGAAATTATTGTTGGAAAATATTAAAGTTTAGTTCTGAAATATATGACT
AAAGTGAAGAGTAATATATATTTAAATTACAGAGTAAAATGACAATGAGA
GTGAGTAATGGGGCATGTGAAAAGTAAATTAAGTATTAAAAATATTGAGT
TGATACATTTTCTGAATAAACACCATTACAAACAATATGGATCTTTTAAT
ATGTTGATATTGTATGTAGTAAACAGAGGTATTGAGCACATACAACCACA
CACCCATACACACACACATACACACACACACACACACACACACATACACA
AACACACATACACAAAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_n23.b1 MSMg01no211_n23.b1 CHROMAT_FILE:
MSMg01no211_n23.b1 PHD_FILE: MSMg01no211_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:23 2005
         (247 letters)



>mm_chr16_69471275_69471921
          Length = 647

 Score =  319 bits (165), Expect = 9e-92
 Identities = 209/239 (87%), Gaps = 26/239 (10%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattggattttaatgactaggcataaacctggcaatatccactaacaaaacaagcaatct 65
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattggattttaatgactaggcacaaacctggcaatatccactaacaaaacaagcaatct 265

                                                                       
Query: 66  ctctaccaggcacgaccaaattgttgttttgtataagagaattgtaagaaaaatgaaata 125
           |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctctaccaggcatgataaaattgttgttttgtataagagaattgtaagaaaaatgaaata 325

                                                                       
Query: 126 tattggaaaaaatagaaagaaggaaagaaagaaagaaggaaagaaagaaagaaagaaaga 185
           ||||||||||| |||||||||||||||||||||||||    |||||||||||||||||||
Sbjct: 326 tattggaaaaa-tagaaagaaggaaagaaagaaagaa----agaaagaaagaaagaaaga 380

                                                                      
Query: 186 aagaaagaaagaaagaaagaaagaaagaaagaagggagggagggagggagggagggagg 244
           ||||||||||||                     ||||||||||||||||||||||||||
Sbjct: 381 aagaaagaaaga---------------------gggagggagggagggagggagggagg 418



 Score =  120 bits (62), Expect = 8e-32
 Identities = 71/74 (95%), Gaps = 2/74 (2%)
 Strand = Plus / Plus

                                                                       
Query: 139 agaaa-gaaggaaagaaagaaagaaggaaagaaagaaagaaagaaagaaagaaagaaaga 197
           ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 460 agaaaggaa-gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga 518

                         
Query: 198 aagaaagaaagaaa 211
           ||||||||||||||
Sbjct: 519 aagaaagaaagaaa 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 4
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no211_n23.g1 MSMg01no211_n23.g1 CHROMAT_FILE:
MSMg01no211_n23.g1 PHD_FILE: MSMg01no211_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:24 2005
         (643 letters)



>mm_chr16_69509141_69510184
          Length = 1044

 Score = 1069 bits (553), Expect = 0.0
 Identities = 598/615 (97%), Gaps = 5/615 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgctacatatgtatctctggcctttattccctcctggatatttcatacaaattctgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tttgctacatatgtatctctggcctttattccctcctggatatttcatacaaattctgtg 702

                                                                       
Query: 61  gtgtcttacagttagtattttaatatcaaacaagtatcttaatatttttaatagttatta 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 --gtcttacagttagtattttaatatcaaacaagtatcttaatatttttaatagttatta 644

                                                                       
Query: 121 tgtagctccataaagtttttcagttaatagttttatttagtagaaaagtgaggtcatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 643 tgtagctccataaagtttttcagttaatagttttatttagtagaaaagtaaggtcatgat 584

                                                                       
Query: 181 gtgcttattacatataattaagatcagaacattctctagtgatttaagtactaaatatat 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 583 gtgcttattacatataattaagatcagaacattctctggtgatttaagtactaaatatat 524

                                                                       
Query: 241 aaaaatttaaacagagaagtgtaagaaacataaatgaaagaattactaaaattgaggtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aaaaatttaaacagagaagtgtaagaaacataaatgaaagaattactaaaattgaggtta 464

                                                                       
Query: 301 agttttaaaaaattccaaatttggaagaaattattgttggaaaatattaaagtttagttc 360
           |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct: 463 agttttaaaaaattccaaatctggaagaaattgttgttggaaaatattaaagtttagctc 404

                                                                       
Query: 361 tgaaatatatgactaaagtgaagagtaatatatatttaaattacagagtaaaatgacaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tgaaatatatgactaaagtgaagagtaatatatatttaaattacagagtaaaatgacaat 344

                                                                       
Query: 421 gagagtgagtaatggggcatgtgaaaagtaaatta---agtattaaaaatattgagttga 477
           ||||| ||||||||| |||||||||||||||||||   || |||||||||||||||||||
Sbjct: 343 gagagagagtaatggcgcatgtgaaaagtaaattattaagaattaaaaatattgagttga 284

                                                                       
Query: 478 tacattttctgaataaacaccattacaaacaatatggatcttttaatatgttgatattgt 537
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 taaattttctgaataaacaccattacaaacaatatggatcttttaatatgttgatattgt 224

                                                                       
Query: 538 atgtagtaaacagaggtattgagcacatacaaccacacacccatacacacacacatacac 597
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 223 atgtagtaaacagaggtattgagcacatacagccacacacccatacacacacacatacac 164

                          
Query: 598 acacacacacacaca 612
           | ||||||| |||||
Sbjct: 163 aaacacacatacaca 149


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1044
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1034
Effective search space:   654522
Effective search space used:   654522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)