BAC Information

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BAC

Clone NameMSMg01-212I01
Chromosome16 (Build37)
Map Location 42,179,660 - 42,179,888
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667450, Lsamp
Downstream geneGap43, BC002163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212I01.T7 (MSMg01no212_i01.b1)MSMg01-212I01.TJ (MSMg01no212_i01.g1)
ACCAG393834AG393835
length941708
length of high quality
(start - end)
---229 (128 - 356)
definitionCHROMAT_FILE: MSMg01no212_i01.b1 PHD_FILE: MSMg01no212_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:17 2005CHROMAT_FILE: MSMg01no212_i01.g1 PHD_FILE: MSMg01no212_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACGTAGAGTGCGGGGNCGNGCATAAGAAGCAGCTGAGTTATCTAGCAGA
GAGGAGATTCCGCCGATCAATTGCCATGCCCCTCCGTATTAGCTGCGACG
TAGTGAATCTAGTATATGCGACTTACTATTAACACCATAGTATCCCCCCA
ACATGTTTGTTCCTAATTAAAATTAACGCTTCTCCCCTTTCGCGCCATAC
CGCTCGCATCTACAGGCNTGACNNNNGGGCCAGAGAAGAGNNNNNNNNNN
NNNCCGAAAATCATAAAATAAAAAATTTGNNNCGGGGCCCGGNCTTAAAA
TAACCGNAAANNTNCAAACNTAAANTAGNCGGNGNNAAGAAAGGGGNAAT
TNCNCCCGGCCGGGGGNNGAAAAATTNTAAAACAACAAAATTCAAAAAAT
TGCCTTAAAAAANTGGATTGTNTTTTAAGTNCCANAANAGAAGAGGGTTC
CGGGGACGGAAAAAAAAAAGCTTCCAAAAATTCCGGAAACAAGGTTTTGG
GGAAAAAAAAAACGTCGGCCGTGCCGTNTGGTCCTTTTTAAAAAAGAACN
NGNCGGAATAAAATTATCGAAACGCCCAAAACGAATCTCTGAAACCCTTG
AAAAAGAAACAGAAACGGCAAAAGAAAATGGGTCCCCGGGGTTTCTGGAA
AAACCTCTTATAAAATTCCTGGAAGGGAAAAAAAAATTCGCGGTTTTAAA
ATTCCAAAAACGTGGAAATTAAATTTCCCGGGGAAAAAACAATAAAAAGG
GGAAAAAAAAAAAAAGCCCTTGGGAAAAAAAAAAGGGCGCGAAGAGGAAA
AAAATGGTGGGGGAAAAAAAAAACATTTTGGAAAAAAGAACAAACCTTCT
CAAAAAAAAAATAACGCCGGGGGGGGGGGGGGAAAAAAAATAAATTCCCC
AAAACCCCCGGCTTTTTTTTTTGGTGAGAGGGGAAAAAAAG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGACTTTCCAGATGAGAAAACTAAAC
TAAACTCAGGAACTGTTACCCACTTGCCTGTGTCAGCATCTCACAGCTTT
TTGTGTGGCGAGACCCAAAGCAACAGCCCCATTTTCTTGGCTCCAATCCT
GATACACCTTTCATGTTACAGATGCCCTTTGTCCTTGGTAGATGAATGTA
AGCCTCAGTGTGAAATCTCTTCCTACAATAGTCTGGTATGACATTCATAT
CATCTCTCTTGATGAGTCTGTCAGTCGTTCTGATTAAAGTAAAGGTCTAT
GGTACTTTGTTATCTCCCCCCACACACCTGGGAGTGACATTTTCATTCAA
ATGACTTTGTACCTTCCTTTTAAACCATTGGCCTGTAGATCCACAAGGCT
GCCAGGGATAATGATGATAATAATAATGATGATGATGATAATAATGATAC
AGGGAGATTCAGCAAAATATTTCTCAAGGATATAACATATTTCAAATTAG
GATGACAAAGATATTTGCTGAGTCTGGTTAAGTGTAAAACAGTCCAAAAA
ACGGGGAGTGTGTAATAATCTGTTCATGTAAGTACTGGTGAATCTGTTGG
AGCGATTTACATAAGGACACAATATAATATGTATTAGCTGGCAAGAACCC
AGTAACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_i01.g1 MSMg01no212_i01.g1 CHROMAT_FILE:
MSMg01no212_i01.g1 PHD_FILE: MSMg01no212_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:17 2005
         (229 letters)



>mm_chr16_42179473_42180100
          Length = 628

 Score =  424 bits (219), Expect = e-123
 Identities = 225/229 (98%), Gaps = 4/229 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtgtcagcatctcacagctttttgtgtggcgagacccaaagcaacagccccattttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ctgtgtcagcatctcacagctttttgtgtggcgagacccaaagcaacagccccattttct 357

                                                                       
Query: 61  tggctccaatcctgatacacctttcatgttacagatgccctttgtccttggtagatgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tggctccaatcctgatacacctttcatgttacagatgccctttgtccttggtagatgaat 297

                                                                       
Query: 121 gtaagcctcagtgtgaaatctcttcctacaatagtctggtatgacattcatatcatctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gtaagcctcagtgtgaaatctcttcctacaatagtctggtatgacattcatatcatctct 237

                                                            
Query: 181 cttgatgagtctgtcagtcgttctgat----taaagtaaaggtctatgg 225
           |||||||||||||||||||||||||||    ||||||||||||||||||
Sbjct: 236 cttgatgagtctgtcagtcgttctgattaaataaagtaaaggtctatgg 188


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 628
Length adjustment: 9
Effective length of query: 220
Effective length of database: 619
Effective search space:   136180
Effective search space used:   136180
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)