BAC Information

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BAC

Clone NameMSMg01-213A10
Chromosome16 (Build37)
Map Location 41,360,352 - 41,360,645
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG667450, Lsamp, Gap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213A10.T7 (MSMg01no213_a10.b1)MSMg01-213A10.TJ (MSMg01no213_a10.g1)
ACCAG394165AG394166
length1,186751
length of high quality
(start - end)
---294 (64 - 357)
definitionCHROMAT_FILE: MSMg01no213_a10.b1 PHD_FILE: MSMg01no213_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:57 2005CHROMAT_FILE: MSMg01no213_a10.g1 PHD_FILE: MSMg01no213_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAGCGCACTACACCGGACAAACGCACAGAGCAGACAAATTCGAGTCATAT
ATATCCTTTCCGAACACGTCGGACTGAATCATGAAGAGGAGAGTGTATGA
AGAGTACAACTACAAGCAGGTATTAACTGAGCAGCGCAACCCAACGACCC
GCGCCACTTCTGTTCTCACTTGTTACGCCGCTGCGCACCCGTCGCGCCAC
GACGACAGTCAGGCTTGTGGTTGGGCGCACCACCTCTGCGACACCGCCGT
TCTTGCAGGTGTCCCGCCCTAAGTCAGTCTTGTGAACCTGCCCTCGCCCC
GCATCGTTGCGTCTTCCGCCAGTGTTAGTAGGTGTACGGAGCGCCGCGCG
CGTGATGCGCGCACGCAGCGCCGGATCGTACCCAGAGACCCGCACGTCAC
TATTCCTAGATGTTTGACCGTGCGCGCTGCGCATCTCGAGTCATCGCTCC
ATGGAATGGTGTATAATAGATAGGACCGCTCGCGCGCTTCGCGTCTGCGC
CTCGCCGCTCTCGTGCCGCGCGCGTGTGGTGCATGGCTGTGAGAAGTAGT
GTGGTTGTTGTGCGGGCCGCACAGCGCGCACACCCAAGCGGCGAGTCTGA
CTTGAATGCGACGACACGTACGTATGCACGCCGCACGGGCGCCACGGCAT
AGTACTATGATAGACTACACGTGTGAGACTNGACGAGTGCTGGCTCCCGA
CGACAAGAACTATGACGATGAGGCAGTGCTCAGGCCCGTCGGTGTATTGA
GCCCGCGTGTTCTCGTGTCGTGCTCCCGACTCCATGGCATACACTGATAG
TCATAATACATAATCATTTTTATAGTTACATTATGTGATATATGCACNTA
CAGATACTATACGAATCTGCCCGACTGCCTCTATCTACATCTACTACTCA
TCTNCGTCTACTCTATCACCACTCCTCAAGTCTCGTAGAGGGTCAGGAAC
TGTAACGGTATACGCCGGAGTGATTGCTAGCGTTCTCTGTTACAAAGTCT
CATCAATGTNTGAGGTGGTGGGAGATACATGATGGCTGACATGTATACGC
TCATCACCGNCTCCAGATGCTCATAAGCACACACCTCACGGCTGTCGGCG
GCGTGCGACGTATATATCAGAGATAGTGCGCGCATTTATAAGACTGCTGC
TGGAGAGATGTTTAGATACTGTTCAACAACTACACN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCAGAAAATAGAAACCATCTGTTTCAAAGCATGAAAA
GGAAGAAGAAATGGCTCTGAAAGCATATCATAGTGGGCTGGGCTCATCCT
ATAGGTCCTTTGAAAACTAAACCATCATGAAGGGTTTGCACATAAGAGTG
ATGGGTTTGAGAATGAGACTCATGTAACCGTAAATGGCAAACACTGCTGA
GGATCATTAGAAATGTTAACTTTCCAGACTTGAAAGATGGCACAGTTGAG
AAAGTGCTTGCCATCCAGCAGGGAGGACCTGAGTTTCATCCCTGGCACCC
ATGTGAATAAACCAGGCATGAGGGCACATTCTTGTAATTCCAGTGAGGAA
GAGGTGAAGACCCCCGCTTATCTGGGAGGTTCCTGGGCAGCCAGCCCCGT
CTATTCAGTGCATTTTAAGGACAATGATAGACTCTGTGTCCAAAATGAAG
TTGAAACACCACTGCTGAAGGACACCTAAGTCTGCCCTCTACTTGCTTAT
ACATGCACTCACAGAAACATGTGACATACACTCCTTGTTTTTGTCATTTG
AACATTTTGCTGCCCTCCCACTAATACACATCACCACTCACTATTCACAA
ACTCTCTCCTCTCTCCTTTTATCAATTAAAATTCTGGATTAATCCCCTTT
TTTTACAAACTTATATTCCTTATTATTATATTTTCTATAATTCTCCTAAC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_a10.g1 MSMg01no213_a10.g1 CHROMAT_FILE:
MSMg01no213_a10.g1 PHD_FILE: MSMg01no213_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:57 2005
         (294 letters)



>mm_chr16_41360233_41360926
          Length = 694

 Score =  561 bits (290), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagaaaatagaaaccatctgtttcaaagcatgaaaaggaagaagaaatggctctgaaag 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 413 tcagaaaatagaaaccatctgtttcaaagcatgacaaggaagaagaaatggctctgaaag 354

                                                                       
Query: 61  catatcatagtgggctgggctcatcctataggtcctttgaaaactaaaccatcatgaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 catatcatagtgggctgggctcatcctataggtcctttgaaaactaaaccatcatgaagg 294

                                                                       
Query: 121 gtttgcacataagagtgatgggtttgagaatgagactcatgtaaccgtaaatggcaaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gtttgcacataagagtgatgggtttgagaatgagactcatgtaaccgtaaatggcaaaca 234

                                                                       
Query: 181 ctgctgaggatcattagaaatgttaactttccagacttgaaagatggcacagttgagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ctgctgaggatcattagaaatgttaactttccagacttgaaagatggcacagttgagaaa 174

                                                                 
Query: 241 gtgcttgccatccagcagggaggacctgagtttcatccctggcacccatgtgaa 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 gtgcttgccatccagcagggaggacctgagtttcatccctggcacccatgtgaa 120


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)