BAC Information

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BAC

Clone NameMSMg01-213J12
Chromosome16 (Build37)
Map Location 63,770,271 - 63,770,556
singlet/doubletsinglet
Overlap geneEpha3
Upstream geneNsun3, Arl13b, Stx19, Pros1
Downstream geneLOC100043540, Ckt2, 4930453N24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213J12.T7 (MSMg01no213_j12.b1)MSMg01-213J12.TJ (MSMg01no213_j12.g1)
ACCAG394536AG394537
length720716
length of high quality
(start - end)
---288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no213_j12.b1 PHD_FILE: MSMg01no213_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:39 2005CHROMAT_FILE: MSMg01no213_j12.g1 PHD_FILE: MSMg01no213_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TGCCTCATGAGCATTTTATGCGCATTACACTTATTCTGACTCCGCACTAG
GCGTAAGACTAACTTTGCGACGTCCATATAACATGGTAGCTGACAACACT
CAGACTGTCTATCTATTTATTTAATATGAGAATTTGACATCAAGCGTCTG
TAGGAAGATCGAACGTCACATGACATCCGGTGGCACATACAGCAGTCCTG
AACCAAGGAATGCTGACCCCCTCTTACTAACACTATAATTACTGTAXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCCATGTCGAAGTGACT
ATTGTGCATATACATTGTATTTTGCGCCCGCCCTCCTCCCCTATACTATA
CTGACTCCAAGTACTGAATAGAGCCACCCACAACACCTCTGAATCTTATC
GGATTTCGGTCATACAACGAATATGTCTAAXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAACTAAGTATAAAAATGGATAATT
GTGGCTTTGTGTTGTTTTTAGAGTCATTCTCATTTGTTTACAAACTATTG
GAATAGGAAGAATAACGTGCTGCCTGTAGTAAATCTTACCTATTCCGAAA
GAGAGAGTTCCCATGTTCTATTACGTCATTTTACTGTAATCACCAAGACC
TACAGCATACACATGAGAATGGTTTTATGTTAGTCCCTGTCACAGAATGG
CTTTCAGAAAGATTCAAATTTCTTTTCTAGTCAATTTCCTAATGTAACTA
ATGTAATATGTTTTTTATTCTCCCCCCCCACCACAGTTAATTAGGATACT
TAATGTTAAGTGATCTGACTACCACAAATGAGTCAGGGCATTCACATGCA
CATATAGGTTTTGCTTTCCACAAACACATTTCTTATTTTTGAATAGAACC
AGAAGAGCAATCTCCAGAGGCAAAAGTCTGATTATAGGATTTTTAGTGTA
CATAGTTTATATTTTTACGACTATACAGTTTTTATGCGCTACTAACCATT
ATTAATCAGTATCATTTTAACCATGGGTTTGAATCATTCTTTACTGATTC
GTTAATAAGTGCCAATTTGTAGATTGACTACTACAAATCAAATGACCAGT
ATCCTCTTTGTATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_j12.g1 MSMg01no213_j12.g1 CHROMAT_FILE:
MSMg01no213_j12.g1 PHD_FILE: MSMg01no213_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:39 2005
         (288 letters)



>mm_chr16_63770071_63770758
          Length = 688

 Score =  499 bits (258), Expect = e-146
 Identities = 279/286 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaactaagtataaaaatggataattgtggctttgtgttgtttttagagtcattctcatt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 486 agaactaagtataaaaatggataattgtggctttgtgttgtttttagagtcattcttatt 427

                                                                       
Query: 61  tgtttacaaactattggaataggaagaataacgtgctgcctgtagtaaatcttacctatt 120
           ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 426 tgtttacaaactattggaatagggagaataacgtgttgcctgtagtaaatattacctatt 367

                                                                       
Query: 121 ccgaaagagagagttcccatgttctattacgtcattttactgtaatcaccaagacctaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ccgaaagagagagttcccatgttctattacgtcattttactgtaatcaccaagacctaca 307

                                                                       
Query: 181 gcatacacatgagaatggttttatgttagtccctgtcacagaatggctttcagaaagatt 240
           ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 306 gcagacacatgagaatggttttatgttagtccctgtcacagaatggcttttagaaagatt 247

                                                         
Query: 241 caaatttcttttctagtcaatttcctaatgtaactaatgtaatatg 286
           |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 246 caaatttcatttctagtcaatttcctaatgtaactaatgtaatatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)