Query= MSMg01no215_d18.b1 MSMg01no215_d18.b1 CHROMAT_FILE:
MSMg01no215_d18.b1 PHD_FILE: MSMg01no215_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:50 2005
(686 letters)
>mm_chr16_42591392_42592477
Length = 1086
Score = 1257 bits (650), Expect = 0.0
Identities = 674/682 (98%), Gaps = 1/682 (0%)
Strand = Plus / Plus
Query: 5 gaattccatttagtcttacgttgcctccatagacacatttgtcctaaatatttctccata 64
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatttagtctaaagttgcctccatagacacatttgtcctaaatatttctccata 264
Query: 65 cataacgaactgcaagccaactttgtgtgttaacagactggaaggtattcttataccaat 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cataacgaactgcaagctaactttgtgtgttaacagactggaaggtattcttataccaat 324
Query: 125 tacctgaaactcggccaatcagattagccaaccttcagccaaccccaggcagccaactgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacctgaaactcggccaatcagattagccaaccttcagccaaccccaggcagccaactgt 384
Query: 185 tcaaatcaggttcaaatcaggcaaacgtcaaacttcaaccaatcaaactatctctgtacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaaatcaggttcaaatcaggcaaacgtcaaacttcaaccaatcaaactatctctgtacc 444
Query: 245 tcacttccactttccatatgtcatttcctcttctctggctataaatatcatctttccatg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcacttccactttccatatgtcatttcctcttctctggctataaatatcatctttccatg 504
Query: 305 tggcggggtggagcatccgaaaccatttttggcccagactgctgcccaattttaaaattt 364
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 tgtcggggtggagcatccgaaaccatttttggcccagactgctgcccaatttttaaattt 564
Query: 365 caattaaaagccaattaagatctgtaaaactagaattttgcaatttttctcttgtagcca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caattaaaagccaattaagatctgtaaaactagaattttgcaatttttctcttgtagcca 624
Query: 425 aacataatttgaggtaaaatcagtaagtcttggtgataattagacaacggatttcatatc 484
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 625 aacataatttgaggtaaaatcagtaagtcttggtgataattagaca-cggatttcatatc 683
Query: 485 ttagattaagtacaactgtgagaacagaagacctgtcgcaactgtgagaaggaagtttat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttagattaagtacaactgtgagaacagaagacctgtcgcaactgtgagaaggaagtttat 743
Query: 545 ttcttttgcacatgatcgagtcagttaagcactggctttcctctcagaggaatgcaactc 604
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttcttttgcacatgatggagtcagttaagcactggctttcctctcagaggaatgcaactc 803
Query: 605 ctcccacctcctcactgtgctacccatggtggtgtggactttcatcgcctgaattacatg 664
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 804 ctcccacctcctcactgtgctacccatggtggtgtggactttcattgcctgaattacatg 863
Query: 665 gctgctggtgccgggtccatgt 686
||||||||||||||||||||||
Sbjct: 864 gctgctggtgccgggtccatgt 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no215_d18.g1 MSMg01no215_d18.g1 CHROMAT_FILE:
MSMg01no215_d18.g1 PHD_FILE: MSMg01no215_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:50 2005
(654 letters)
>mm_chr16_42731944_42732997
Length = 1054
Score = 1006 bits (520), Expect = 0.0
Identities = 552/576 (95%), Gaps = 22/576 (3%)
Strand = Plus / Minus
Query: 80 aacacacacaacgtacactgcatatgtgtgtttgtgtttgctcacatgtgtggggagagg 139
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 aacacacacaatgtacactgcatatgtgtgtttgtgtttgctcacatgtgtggggagagg 995
Query: 140 catggtgaaggaaatacactagacatcttaacagagtaaacatacaaaaatgggaaggga 199
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 catagtgaaggaaatacactagacatcttaacagagtaaacatacaaaaatgggaaggga 935
Query: 200 tttgtaagcttcttaagggcaggtaccacagatcgcgtatcctgcacagatatatatata 259
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 tttgtaagcttcttaagggcaggtaccacagatcgcgtatcctgcacag----------- 886
Query: 260 tatacacacatatatatatatattgtaaa--atatatatattgtaaaaaacagactgaat 317
|||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 885 ---------atatatatatatattgtaaaatatatatatattgtaaaaaacagactgaat 835
Query: 318 gaataaatgtctctctcaatttgtggctttttaactgaccatgcttctaggcttcaacaa 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 gaataaatgtctctctcaatttgtggctttttaactgaccatgcttctaggcttcaacaa 775
Query: 378 aaagagtacatggattttattgtattcagaaaaccaacaacttcaatctcaactcagaca 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 aaagagtacatggattttattgtattcagaaaaccaacaacttcaatctcaactcagaca 715
Query: 438 ccagtctttggcatccaacttgaaaagaaggagcttccaatatcactaggccagagacaa 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ccagtctttggcatccaacttgaaaagaaggagcttccaatatcactaggccagagacaa 655
Query: 498 atacactcgagatgctaagagtgtttctggagggtgttcagaatgagacagccactcagc 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 atacactcgagatgctaagagtgtttctggagggtgttcagaatgagacagccactcagc 595
Query: 558 tttgctttgcgattttacttaccaaaagagacaggataagggccagattgtagccacgtg 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tttgctttgcgattttacttaccaaaagagacaggataagggccagattgtagccacgtg 535
Query: 618 agttaatcacagtgactcattttcaacaagcatact 653
||||||||||||||||||||||||||||||||||||
Sbjct: 534 agttaatcacagtgactcattttcaacaagcatact 499
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
