BAC Information

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BAC

Clone NameMSMg01-215I09
Chromosome16 (Build37)
Map Location 29,954,218 - 29,954,502
singlet/doubletsinglet
Overlap genenone
Upstream geneHrasls, Atp13a5, Atp13a4, Opa1
Downstream geneGm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215I09.T7 (MSMg01no215_i09.b1)MSMg01-215I09.TJ (MSMg01no215_i09.g1)
ACCAG395742AG395743
length716721
length of high quality
(start - end)
314 (38 - 351)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no215_i09.b1 PHD_FILE: MSMg01no215_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:13 2005CHROMAT_FILE: MSMg01no215_i09.g1 PHD_FILE: MSMg01no215_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCT
CTCACTGTCTTTCTGGGACGTCCCACCTCCTATTTCCTGCCTCAGCTCAT
TGGCCAAAGGCTTTTTTATTGATAGGTGATGCTACTATACATTACATAAG
AGGTCCTCTCTACACATGTGTGTGCATGTGGGTGCATGCACATGCAGGCC
AGAGGACAATAATCTTAAGTGACATTCCTCAGGTGTTAGCCACCCCCCCT
TTTGTGACATCATTTCTCACTGACCTAGAAGTCTTTGCAGAGGCTAGGCT
GGCCAGTGAGCCTGAAATCCACTTGTCTTTTTCTCTCTGGCACAGGACTC
TTTTTATCTGCCTCCCCCCCCACTCACTCTGTACTCCAGGCTGGCCTCAA
ACTCATACACATCCACTTGACTCTCTGCCTTCTGAGTGCTGGGATTAAAG
GTGTGCACCACCACTGTCAAGCCTTACATCTAGTTTTCTAAAAACAGAGA
TTCTAGATAGAGATTTAACTCACGACTAACTAAGCCATCTCCCTAGTCAT
GACATTATGTGTGTGTGTGTGTGTGTGTGCAAGCCTGTGCGCCGTCACAT
GCCTACGTGCCGTGTTTTACAATCCACCACCATCACTTTTTCCTTCTTTT
TTCCTTTTCTTTTTTTGATATCCATCCATCTACCCCCTCCCTTTTTTTTA
ACTTCCACATTTTTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTCAGGAATGTCCCCTGTGGCTT
TCCAGGTGCAGGTGGCAGGTAGAGGGAAGAAGGACTCTCAAAATCAACCT
CTGCAATCTGACTTTCCCCATCCTTGGTTTTCAAGCCTTAAAGGGATTTA
TGGCTACAGTGCCTGGCCTGGTGTCTCCTGCAGTCGCCCTCCTCTTCACT
CTCCCACAGCTTGAACCTTGGCTCCCTTTGCTCTCAGTGCTTAGTTTTGC
CTCCCTACTGACCTTACCTGCTCTCTGTCCTTCATGTGCAAGCTTCCCCC
GGAACCTGACCTTTCTTTAACTCCCCCCCCACTTGAAATTAATGACGATC
GAACTGAAGTCATCAAAAGGCAACATGATGTGACTCTTACTGATGAAGAA
AAGACAAACAACATATTTCCTTAGAAAATGATCCCCTGTGAGCTGTTCCT
AGAGTCCTATGGTGATTATTGAAAACACTGTAGAAAAAAAAATTAGAAGC
AAACAATTCACATGCAGCTACATTCAGGAACAATATTTCTAATAACAAAC
AAACAAACAAAACCCATGAACATGTTAAAAATAAAAATCTGGGCATGTCA
GCCCTCAGGAGGCAGAGGCAGGTAGATCTCTGCATTTGAGGCTAGCCAGG
CCTACAGAGGGAGTTCCAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_i09.g1 MSMg01no215_i09.g1 CHROMAT_FILE:
MSMg01no215_i09.g1 PHD_FILE: MSMg01no215_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:13 2005
         (287 letters)



>mm_chr16_29954018_29954704
          Length = 687

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcaggaatgtcccctgtggctttccaggtgcaggtggcaggtagagggaagaaggact 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 agtcaggaatgttccctgtggctttccaggtgcaggtggcaggtagagggaagaaggact 426

                                                                       
Query: 61  ctcaaaatcaacctctgcaatctgactttccccatccttggttttcaagccttaaaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctcaaaatcaacctctgcaatctgactttccccatccttggttttcaagccttaaaggga 366

                                                                       
Query: 121 tttatggctacagtgcctggcctggtgtctcctgcagtcgccctcctcttcactctccca 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 365 tttatggctacagtgcctggcctggtgtctcctgcggtcgccctcctcttcactctccca 306

                                                                       
Query: 181 cagcttgaaccttggctccctttgctctcagtgcttagttttgcctccctactgacctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cagcttgaaccttggctccctttgctctcagtgcttagttttgcctccctactgacctta 246

                                                        
Query: 241 cctgctctctgtccttcatgtgcaagcttcccccggaacctgacc 285
           ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 245 cctgctcactgtccttcatgtgcaagcttcccccggaacctgacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)