BAC Information

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BAC

Clone NameMSMg01-215P21
Chromosome16 (Build37)
Map Location 9,961,855 - 9,962,061
singlet/doubletsinglet
Overlap geneGrin2a
Upstream genenone
Downstream geneLOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215P21.T7 (MSMg01no215_p21.b1)MSMg01-215P21.TJ (MSMg01no215_p21.g1)
ACCAG396041AG396042
length708828
length of high quality
(start - end)
238 (123 - 360)216 (55 - 270)
definitionCHROMAT_FILE: MSMg01no215_p21.b1 PHD_FILE: MSMg01no215_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:48 2005CHROMAT_FILE: MSMg01no215_p21.g1 PHD_FILE: MSMg01no215_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGAATACGCGGAATT
CAAGGCCCATTTTCAAACATGATAAAAGCAATCTACAGCAAACCAGTAGC
CAACATCAAAGTAAATGGCCCCAAGCTGGAAGCAATCCCACTAAAATCAG
GGACTAGACAAGGCTGCCCACTTTCTCCCTACCTCTTCAATATAGTACTT
GAAGTCCTAGCCAGAGCAATTGGACAACAAAAGGAGTTCAAGGGGATACA
AATTGGAAAGGAAGAAGTCAAAATATCACTATTTGCAGATGATATGATAG
TATATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGA
TAAATAGCTTCTGTGAAGTAGCTGGATATAAAATTAACTCAAAGAAGTCA
ATGGCCTTTCTCTACACACAGCACAAATAGGCTGACAAAGAAATTAGGGA
AACAACACCCTTCACAATAGTCACAAATAATATAAAATACCTTGGTGTGA
CTCTAACTTGGGAAGTGAAAGATCTGTATGATAAGAACTTCATGTCTCTG
AAGAAAGAAATCAAAGATCTCAGAAAATGTAAAGATCTCCCATGCTCATG
GATTGGCAGGAACAATATAGTAAAAATTGCTATCTTGCCTAAAGCCATCT
TACAGATTCAGTGAAATCCCCATTAAAATTCCTACTCATTTCTTCAACGA
ATTAGAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXACTTTTTGTTCTCTAGATTCAGAGATAATTCCAGCACCCAAAGCCC
TGACCATATGCAATGTGGCCAGCCTGGTCAATTGGCCCCACCCCTTGGCT
GGCTCAGTTATGGGCTCCTAATTCAGAATCATTCAATCAGAGTTTGTGCC
AGGAATTTTTTTATTTTTATTCATGGTTATTAGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGAGTACAACCAAACAACACTACCCAAAATTATTT
TTTTTTTATCTACACAAAACATTCACTATAACTACCCTATAATTTTTTTT
TTATTCCCTCCCTCACTTCCAATACATTTTCTTTAAATTTTATTTTTATT
TAATATTATTCACCCCCCCCCCCCTTTGAGAAAATTATCACCCCTGCTGT
CCTTATAATTTTTATTTCACTTATATTTACCTCATACCTTATCCTTAATA
TATTTTTTCTTTTACACATATTACCGAGTTTCTCCGCCCTTAGCACACAT
ACTCTATTTATCTACAACCCATCTTTCTCTACTTTTCCATCTCATTCATA
CCACCTTATTCTCTTTTATTTTTTCTATTTTCCTACATCACTTCACTACC
TCTCTATTTTTTTTAATTTTTATCTTTTTTCAACTCATTATTTCTATTGT
CTTTTTTTTTGTAATTTCATATACACATCATTCATAGCATCTTTATTTTT
TTATTATCATTCTACTATTCAATCTTCAATTTAATATATATAACAATAAT
CCTTTCCACCACTCTCTCCTTACTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_p21.g1 MSMg01no215_p21.g1 CHROMAT_FILE:
MSMg01no215_p21.g1 PHD_FILE: MSMg01no215_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:48 2005
         (216 letters)



>mm_chr16_9961655_9962270
          Length = 616

 Score =  362 bits (187), Expect = e-104
 Identities = 202/207 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttttgttctctagattcagagataattccagcacccaaagccctgaccatatgcaat 60
           |||||||||||||||| |||||||||||||||||||||| |||||||||  |||||||||
Sbjct: 201 actttttgttctctagtttcagagataattccagcacccgaagccctgaaaatatgcaat 260

                                                                       
Query: 61  gtggccagcctggtcaattggccccaccccttggctggctcagttatgggctcctaattc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggccagcctggtcaattggctccaccccttggctggctcagttatgggctcctaattc 320

                                                                       
Query: 121 agaatcattcaatcagagtttgtgccaggaatttttttatttttattcatggttattagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaatcattcaatcagagtttgtgccaggaatttttttatttttattcatggttattagt 380

                                      
Query: 181 gtgtgtgtgtgtgtgtgtgtgtgtgtg 207
           |||||||||||||||||||||||||||
Sbjct: 381 gtgtgtgtgtgtgtgtgtgtgtgtgtg 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)