BAC Information

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BAC

Clone NameMSMg01-217J17
Chromosome16 (Build37)
Map Location 17,604,346 - 17,604,544
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4
Downstream geneSmpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217J17.T7 (MSMg01no217_j17.b1)MSMg01-217J17.TJ (MSMg01no217_j17.g1)
ACCAG397075AG397076
length726765
length of high quality
(start - end)
204 (41 - 244)47 (71 - 117)
definitionCHROMAT_FILE: MSMg01no217_j17.b1 PHD_FILE: MSMg01no217_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:16 2005CHROMAT_FILE: MSMg01no217_j17.g1 PHD_FILE: MSMg01no217_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAATCACAATTCAACTGCAGCTGCTGTTGCACACTCAAATGCTTTGAACC
TAACCAGGATACAGATTGCTTTAATGCATCTGTATATGCTTTGATGCCTC
TGTCTGCAGCCTCTCGGCAATGTCTACCTGACAAATCCACATTCATGGGA
ATCCTGATGCCGTTGTTCTACAAAATGCGTATTTCACAAAGAATCATGCA
AAGCAACGCCAGCTACTGGGGCTGTAGTAGCCACAGCAAGAATACTTGAA
ATTACAGCAACAACGATTCCTGACCTACGCTTTGTTCTTTTAAAGAACTT
TTACCTTATTAATCNATTACCCCANAACANAGCCCGATTCTTCTCTCAAA
GCTTGCCCATGTGTACAGACAACCATAAAAGAATAAGTCATTTCCCAAGC
ATTACTGACGATGAAGTAAAGATAAACAATATGCTATTATTAATGCAAGA
ATACAATCTACAGATAACACATGTAACTTCTTGATATGAAAAATTAAATT
CTTCAATAAGCATTACACAAGGCAAAGGTGCATATACAGAAGTGTTATAT
TTATTATATGTATTAAAACTATAATTAGAACCCAATTGTACACGAAATGA
GCCATTATACACAATCATGAGCTTCAGTGCGCTTGTTATGTTTCTATAAG
CCACCGNCTATCACTTGGCTGACCCT
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTATCTTGATAGATAAATAGATAGATAGAT
AGATAGATAGATAGATAGATACATAGATAGATAGATAGATAGATAGATAG
ATAGCTCGCATCCTCGCTCCCCCCCCTTCCTCCTCCCCCCCCCCCCCCCC
CCCCTCCTCCCCCCCCCCCCTCCCCTCTCCCCCCAGTCCCGCTCCCTTCT
CCCTACTCTCTCCCGTCCCCCCCTCCCCCCTCCTCCCCCCTCCCTCCTCA
TCTTCCCCCCCCCTTCTTTTTTTCCCCCTCCCCCCCCCCCCCCTCCCCCC
TCTCCTTTTTTTTTTTTTCCCCCCCTCCCCCCCCCCTCATTTCCCTTCCC
TCTTCCTCTGGTTGTCTCCCCCCCCCCCCTCCCAAAAAAAACCCTCTTCT
CCCGTGGGGGCCCCTTCCTTCCCTCCCCCCCCCCTCCCCCTCTTTTCCCC
CCCCATCCCCTCCCCCCCCCCCCCTCTTCCGCCTCCCCTCCCCCCCCCCC
TCCCTTCTCCCCCTCCCCCCCCCCCCCCCCCCTCCTTCCCCCCCTTCTCC
CCCCCCCCCCCCCCCCCCCCTTTCTTTCCCCCCCCCCTTCCCCCCCCCCC
TCTTTATTCCTCTTCCCCCTCCCCCCCCTCCTTCCTGTTTTCCCCTCTCC
CCCCTTTCCCTTTTTCCTCCCCCCCCCTCCCTCCCCCCCTCTCCCCTTCT
CTCCCCCCCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_j17.b1 MSMg01no217_j17.b1 CHROMAT_FILE:
MSMg01no217_j17.b1 PHD_FILE: MSMg01no217_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:16 2005
         (204 letters)



>mm_chr16_17604142_17604745
          Length = 604

 Score =  339 bits (175), Expect = 1e-97
 Identities = 193/199 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaatcacaattcaactgcagctgctgttgcacactcaaatgctttgaacctaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaattccaatcacaattcaactgcagctgctgttgcacactcaaatgctttgaacctaac 344

                                                                       
Query: 65  caggatacagattgctttaatgcatctgtatatgctttgatgcctctgtctgcagcctct 124
            |||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 343 taggatacaaattgcttcaatgcatctgtatatactttgatgcctctgtctgcagcctct 284

                                                                       
Query: 125 cggcaatgtctacctgacaaatccacattcatgggaatcctgatgccgttgttctacaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cggcaatgtctacctgacaaatccacattcatgggaatcctgatgccgttgttctacaaa 224

                              
Query: 185 atgcgtatttcacaaagaa 203
           |||| || |||||||||||
Sbjct: 223 atgcttagttcacaaagaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)