BAC Information

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BAC

Clone NameMSMg01-217J18
Chromosome16 (Build37)
Map Location 52,758,350 - 52,758,666
singlet/doubletsinglet
Overlap genenone
Upstream geneCblb, Alcam
Downstream geneLOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217J18.T7 (MSMg01no217_j18.b1)MSMg01-217J18.TJ (MSMg01no217_j18.g1)
ACCAG397077AG397078
length726786
length of high quality
(start - end)
320 (39 - 358)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no217_j18.b1 PHD_FILE: MSMg01no217_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:16 2005CHROMAT_FILE: MSMg01no217_j18.g1 PHD_FILE: MSMg01no217_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
TTTTTCCATTAACTTCTCCACTTTATATAATTTCTGAGAACTCCAACAGC
ATGCAAGTTACATGATTCACATATTTTGTGCTTGTCACTTTCCCACTTGA
TCTCATTTTAGGTCAGCGATATTAAGTAAGCTTATAGGTCTCTTCCTACC
ATTCATGAGTAGTACACCACTATCTGTCACTCACTTAACACCAGAATGGA
TAACATGCTCCCATTTGCATTCCTAAAACATACTATACATTAAGCTGCAA
TATTTATGAGACGTGTATACTGAGGAATAAGAGAAATACAATATATAAAA
TAGTTTATTATTATGCCTACCCTGNCCGNAAATTATATGAAGAACACCAT
CCCAGCACGTACTAACCCCCAACCAATATTAATGTCATAGCACAACTGTG
GTACTCCACCATAAAAAGAAAGCAATTCTTTCTCATCTGGTCTACAATTT
CATAATTTCTTGGACCAGAGTTTAATCTTCATGAAGAGGGGACAGTTTTA
ACTTATTTTTCCCTGGAGAATTCCCTCCATAACCTAGAAAATGGAATTTG
GAATCAAGACAGTCACACTTCTGAACATGATTCTCTGTGTCTGGACTCAT
AGCCACCGAATAGCGTTGCACATGGCCTGACAAGACAGCAGGACAAGTCA
TAGCACAGTGCCTCATTCTGAGCTGA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTATACCCCATTT
TTTAACGGGGTTATTTGAATTTCTGGAGTCCAGCTCTTTGAGCTTTTTGT
ATATATTGGATATTAGTGCCCCTACCAGAATTAGGGTTGGTAAAAATCCT
TTCCCACTCTGTTGGTGGCCTTTTTGGTTTATTGACCATATCCTAAGGTA
CCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTAGAACAACAATATTA
ACTAACCAGTACCCCCAGAGCTCATGTCTCTAGCCGCATATGTAGCAGTA
GATGGCCTACTTGGAATTATTTTTTCCCTCGCNNTCTGACACTTTATATA
TCCCTGTATAGGGTAACGCCACCCCCAAGAAGTAAGAGTGTGTGGTTAGG
GAGCAGGGCAGGGGGAGGGTATAGGGAACTTCCGGCTATACCTTTGATTC
GTACTGAAGATAATATCTTCATACCATTCTGATAACCCCGTCTATCTGAG
TATATTTAATGTATAAAGTACCTTGATATTTTTTCTTCAGATTATTATCT
TGAGCCTGTTATCCTTTTTTTTTTCACCTCCTAGCTTCTCTTATAATTTT
TCTCTTTTTGTACTATTATATCTGTTTCCACTTCTCTTACTAACCTCTCC
CCCTTTTTCTCCCTCGTCCTCTACCGTTTCCTTTTTTCCTTGCCGTTTAC
GCTTCATCTTGTTCTCTCTCTATCGAACCCGTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_j18.b1 MSMg01no217_j18.b1 CHROMAT_FILE:
MSMg01no217_j18.b1 PHD_FILE: MSMg01no217_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:16 2005
         (320 letters)



>mm_chr16_52758147_52758866
          Length = 720

 Score =  536 bits (277), Expect = e-157
 Identities = 307/317 (96%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatttttccattaacttctccactttatataatttctgagaactccaacagca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ggaattccatttttccattaacttctccactttatataatttctgagaactccaacagca 461

                                                                       
Query: 64  tgcaagttacatgattcacatattttgtgcttgtcactttcccacttgatctcattttag 123
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tgcaagttacatgattcaaatattttgtgcttgtcactttcccacttgatctcattttag 401

                                                                       
Query: 124 gtcagcgatattaagtaagcttataggtctcttcctaccattcatgagtagtacaccact 183
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 400 gtcagctatattaagtaagcttataggtctcttcctaccattcatgagtagtactccact 341

                                                                       
Query: 184 atctgtcactcacttaacaccagaatggataacatgctcccatttgcattcctaaaacat 243
            ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gtccatcactcacttaacaccagaatggataacatgctcccatttgcattcctaaaacat 281

                                                                       
Query: 244 actatacattaagctgcaatatttatgagacgtgtatactgaggaataagagaaatacaa 303
           |||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||
Sbjct: 280 actatacattaagctgcattatttatgagacatgtaaactgaggaataagagaaatacaa 221

                            
Query: 304 tatataaaatagtttat 320
           ||| |||||||||||||
Sbjct: 220 tatgtaaaatagtttat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)