BAC Information

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BAC

Clone NameMSMg01-218I20
Chromosome16 (Build37)
Map Location 90,703,238 - 90,703,523
singlet/doubletsinglet
Overlap genenone
Upstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
Downstream gene2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218I20.T7 (MSMg01no218_i20.b1)MSMg01-218I20.TJ (MSMg01no218_i20.g1)
ACCAG397680AG397681
length695726
length of high quality
(start - end)
---290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no218_i20.b1 PHD_FILE: MSMg01no218_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:36 2005CHROMAT_FILE: MSMg01no218_i20.g1 PHD_FILE: MSMg01no218_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATAATTGGGCGCTAAAGACTCACTAATTCCGAGCGCGCGGAATCNTAGG
TTTGCCCGATCAGGGNGCNAGGANCNCAGGAGGCAGNTTTGACATCCTAT
TGTCCTNGAGGATATAAGTGGATTGGGGGNATTAAATAGTATTTTTAATT
GTAAGTAGTGTTATGTTGTTTTGTAGATGATGAGGATAGTAGAGATTTAA
GGGATTTTGGAAAGAAGTTTTTTATTGGAAGATAATGGGATGGGAGGAGA
TTAAAGAATTGGGGGGAAAAGATTATATTTTNAGGANGNAAGNAAGAGAA
GAGAATTTTTTTTTTCCCCCCCCCCCCCAGGATGGATGTTGAGAGGAGAT
AGTTCCCCCCCCAAANGTGATGNCAAAGGGCGGGGGGGGGGGCGGATACC
AGGTTACGAATCTCTCTGCGGACTGTGACACGCTACACGTCCACATTCTT
ATTCATTATACTATATCCCTTATACATCTTCATAACCGTACAGTTTTCTT
CTGTGGAGCCGCCTTGTCGAGTCTGACTTTTGCTTATACTGGCCGACGCC
TAAACCGCACTTGTCCCTCCCGATTCCTGTTTTCGAAGATCCTAAGAAAG
CGCTTTTTTTTTTTTTTCCAAGGAAACACTAAAACACTAGTACTCCCACG
CGGACATTCATCTCAGAGTAATTTAGATACTCTGAATCATTCCCT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAAGGCAGCAGCCATGCCAGCCAAG
GCTGGTGGCTGGATTGTCAGGAAGTGCCTTTCTCTGAGCCTTTCCAGGAT
TTGGGGTTTCTGGTCTATATCGTGGCAAGAGGGTTGGAGGTAGTATCTCA
TGTGTAACATGAGGTGAGCAGACACCACCTTCCAAAGGTCCCAAGACCTC
TACAAATAGCACCCCAGCGTGGGGACCAAGTATTGGCACACATGAGACCA
TGGGGGATGTTTCTAATCCAGACCTCCACAAGGACATGCTGGGAAGATGG
CTAAGCCTGCTTTTTATTTATGACCCCCCTCCCCCCTCAGACTTAAAGCC
TCTAGGACTTCAAGCAAACACCCGCCTGTTACCCAAGTCACATGGTCCAT
GACGTTTTCCTATGGCAGCCTAGCAGATGACGACAGCCAGCCACTTACCA
GCTTGCTGTGCTTTTAGATGAGGCACCTGCCATGGGGCCAAAGGGGACCA
ACAGGGTGCTGCTAGCCTGAGTTCCCAGGGTGATGGCCCTGGAGTTCGTA
CTGAGGCTCTCTCCTCTCTCGACACTAGCCTCGGTGCTAGCCTTGTGCTG
AGCTAAGAACCAGGCAGGCTGGGGTGCTCAGTGATGCTCTCTTAAATGTA
ACTGAGGATGAGGGCACACGTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_i20.g1 MSMg01no218_i20.g1 CHROMAT_FILE:
MSMg01no218_i20.g1 PHD_FILE: MSMg01no218_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:36 2005
         (290 letters)



>mm_chr16_90703038_90703727
          Length = 690

 Score =  522 bits (270), Expect = e-153
 Identities = 282/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaggcagcagccatgccagccaaggctggtggctggattgtcaggaagtgcctttctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaggcagcagccatgccagccaaggctggtggctggattgtcaggaagtgcctttctc 260

                                                                       
Query: 61  tgagcctttccaggatttggggtttctggtctatatcgtggcaagagggttggaggtagt 120
           |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 261 tgagcctttccaggatttgggggttctagtctatatcgtggcaagagggttggaggtagt 320

                                                                       
Query: 121 atctcatgtgtaacatgaggtgagcagacaccaccttccaaaggtcccaagacctctaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 atctcatgtgtaacatgaggtgagcagacaccaccttccaaaggtcccaagacctctcca 380

                                                                       
Query: 181 aatagcaccccagcgtggggaccaagtattggcacacatgagaccatgggggatgtttct 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatagcaccccagcgaggggaccaagtattggcacacatgagaccatgggggatgtttct 440

                                                         
Query: 241 aatccagacctccacaaggacatgctgggaagatggctaagcctgc 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatccagacctccacaaggacatgctgggaagatggctaagcctgc 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)