BAC Information

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BAC

Clone NameMSMg01-218L09
Chromosome16 (Build37)
Map Location 59,853,353 - 59,952,954
singlet/doubletdoublet
Overlap geneEpha6
Upstream geneOlfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6
Downstream geneLOC100043804, EG668168, LOC668170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218L09.T7 (MSMg01no218_l09.b1)MSMg01-218L09.TJ (MSMg01no218_l09.g1)
ACCAG397783AG397784
length767814
length of high quality
(start - end)
171 (123 - 293)272 (71 - 342)
definitionCHROMAT_FILE: MSMg01no218_l09.b1 PHD_FILE: MSMg01no218_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:48 2005CHROMAT_FILE: MSMg01no218_l09.g1 PHD_FILE: MSMg01no218_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,853,353 - 59,853,523)(59,952,685 - 59,952,954)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAAATGGGGCTCCAAGTACATCCTGTTTGGGAAAAAATCCTTCTAGACA
CAAGGGTCTTGTGAATAGGCCAAGCTAACAGGTGTTGTTCCATATGGGAA
ATGTTCCTGTTGACATTCTCTTCAAAGCTAATGGCAACACACTTTGTGAC
ATTATTACTAGATCCTGATTTATGTATCAATCATGCTTGGTATCACTTTT
CTAATGCTGGTTTGGATCTGAATCTGTATAGTTTGCTGAAATGTTTGTCT
CTTAAGATGTGAGTACTTCTTTTATTATTAAGAACGAATTTATGAAATTC
CTAGCTTTTTGAATGGACTCCCGAGGACAAAACCCTTATTGAGGTATATC
ATTCTNAAAGATTTTCCCCCCCCATAAATCTATCTGATAAGTGTTTGTGT
GTCCCTTACTCTACTATATCCTTCATATAATATTTACTTTGCCACTACTT
ATGCATTCCACGCAAAATGAAACATTGCACTGTTGATCTCTACCGCCCCT
CCTTATATTTGGATAATTCTACTTTCTTTGCCAACCCTTCACTTATTTCT
TCACTTTTGTCATTTCAATTTTACCTTTTTGTTACTTTTTCTATTTTTTT
TCCCTATCCCACGGCAATTCCCTCCCTATAACTCCTTCCTACCTAAATTT
TTTACACCTCTTCATTCCACTATTACCACCTAATAATTCCTTTCTCCCCC
ACCCTCTCTCTCCTTCG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTTATCTTCTACTGAATAAACAACAAG
AAAAGCCTGAGTCAACAGGCATAATTGAAGTGTGCACTATAATCAGTTTC
AGAGTTTTTTGTTTAGTTTTTGTTCTTCTAAACAGTGGTGCAATCTAGAA
GAGGTTTAAGGCATTCCAGTCACTGGCCAACTTTCCTCTTGTGTCACATA
TGGAAATAGCATTACTGATTTAAATTTTTGTTTTATTTATTACCACCATC
TATATGTCTGTATGTGTGTTTGTGTGTGTGTGTATGTGTGCGTGTCCCTG
AAAATTTTTCATTAATTTCCCAAAACAAAACCCCTTTTTTTTTTTTTATT
TTTTATTTATTATTCCTCCCCCCCCTTTAAAAAAAAAAAAAAAAATCGCG
TGGTGGGGGTCGATCCTACCTCTTCCCCTTTATTTTTTCTTATTTCCTCC
CTTTACTTCTTTTTTTTTTTTTCTTCTTCTATTATCTTATCCTTCTTCCC
TCTCCTTTTTTCCCTCTCTTTTTTTCCCCTTCTCATTCCCCTTTTCTTCT
AATTTCTTCTATTCTCTTTATTGCCTCCCTATTCCTTTTCCCCCTTTTTC
TTTTTTTCATTTCCTCTTTCCCTTTCTTTCTCTTCTATATGCTCTTTCTC
TTCCTTTATATACCTTGCTCACCTCTTTTCCCTTCAATTTTTTCTTTTAT
CTCTCCTCACTTTCACCATCTTTTTTTTTAACCGCTTATCCTTATTCCAT
TACTCGTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_l09.b1 MSMg01no218_l09.b1 CHROMAT_FILE:
MSMg01no218_l09.b1 PHD_FILE: MSMg01no218_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:48 2005
         (171 letters)



>mm_chr16_59853153_59853723
          Length = 571

 Score =  323 bits (167), Expect = 4e-93
 Identities = 170/171 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctaacaggtgttgttccatatgggaaatgttcctgttgacattctcttcaaagctaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctaacaggtgttgttccatatgggaaatgttcctgttgacattctcttcaaagctaat 260

                                                                       
Query: 61  ggcaacacactttgtgacattattactagatcctgatttatgtatcaatcatgcttggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaacacactttgtgacattattactagatcctgatttatgtatcaatcatgcttggta 320

                                                              
Query: 121 tcacttttctaatgctggtttggatctgaatctgtatagtttgctgaaatg 171
           ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacttttcaaatgctggtttggatctgaatctgtatagtttgctgaaatg 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 571
Length adjustment: 8
Effective length of query: 163
Effective length of database: 563
Effective search space:    91769
Effective search space used:    91769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no218_l09.g1 MSMg01no218_l09.g1 CHROMAT_FILE:
MSMg01no218_l09.g1 PHD_FILE: MSMg01no218_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:49 2005
         (272 letters)



>mm_chr16_59952521_59953192
          Length = 672

 Score =  499 bits (258), Expect = e-146
 Identities = 267/270 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgttatcttctactgaataaacaacaagaaaagcctgagtcaacaggcataattgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tttgttatcttctactgaataaacaacaagaaaagcctgagtcaacaggcataattgaag 375

                                                                       
Query: 61  tgtgcactataatcagtttcagagttttttgtttagtttttgttcttctaaacagtggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgtgcactataatcagtttcagagttttttgtttagtttttgttcttctaaacagtggtg 315

                                                                       
Query: 121 caatctagaagaggtttaaggcattccagtcactggccaactttcctcttgtgtcacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 caatctagaagaggtttaaggcattccagtcactggccaactttcctcttgtgtcacata 255

                                                                       
Query: 181 tggaaatagcattactgatttaaatttttgttttatttattaccaccatctatatgtctg 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tggaaatagtattactgatttaaatttttgttttatttattaccaccatctatatgtctg 195

                                         
Query: 241 tatgtgtgtttgtgtgtgtgtgtatgtgtg 270
           ||||||||| ||||||||||||| ||||||
Sbjct: 194 tatgtgtgtgtgtgtgtgtgtgtgtgtgtg 165


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)