Query= MSMg01no232_a23.b1 MSMg01no232_a23.b1 CHROMAT_FILE:
MSMg01no232_a23.b1 PHD_FILE: MSMg01no232_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:28 2005
(599 letters)
>mm_chr16_29075439_29076437
Length = 999
Score = 574 bits (297), Expect = e-168
Identities = 316/323 (97%), Gaps = 2/323 (0%)
Strand = Plus / Plus
Query: 8 ttctgcttcattacatcttcaaactttggaataagtcttatcactttcagttttagacat 67
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttctgtttcattacatcttcaaactttggaataagtcttatcactttcagttttagacat 267
Query: 68 cagtattaatgcacagtgacttctcattgtatttttctttctactaaaaatactttaggt 127
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cagtattaatgcatagtgacttctcattgtatttttctttctactaaaaatactttaggt 327
Query: 128 gcatggagaagtgtaggagatcgtcataacaggtccgatatgttcttcattttatatttc 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gcatggagaagtgtaggagatcgtcataacaggtccgatatgttcttcattttatatttc 387
Query: 188 ttttgatacatagttatgacatgttttcagagctaagaaattaacattggtccattgagc 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttttgatacatagttatgacatgttttcagagctaagaaattaacattggtccattgagc 447
Query: 248 ttacttttctgaacttagactatatttctgttctagggtaaagtccaggagaacacagtt 307
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 448 ttacttttctgaacttaggctatatttctgttctaaggtaaagtccaggagaacacagtt 507
Query: 308 catcaccatgtttact--gtctt 328
|||||| ||||||||| |||||
Sbjct: 508 catcactatgtttactcggtctt 530
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_a23.g1 MSMg01no232_a23.g1 CHROMAT_FILE:
MSMg01no232_a23.g1 PHD_FILE: MSMg01no232_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:28 2005
(292 letters)
>mm_chr16_29196522_29197213
Length = 692
Score = 549 bits (284), Expect = e-161
Identities = 290/292 (99%)
Strand = Plus / Minus
Query: 1 acagttcaggagttcagctagtctagttagctccagggatccttcatctcagcttcctga 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 666 acagttcaggagttcagctagtctagttagctccggggatccttcatctcagcttcctga 607
Query: 61 cggctagcatgataggcagccgctgtccctgcttggagcttagcttctgaggattcaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cggctagcatgataggcagccgctgtccctgcttggagcttagcttctgaggattcaaac 547
Query: 121 tcagatccccacacttggcaggcaagcactttaggtcagccttctcccagccccagagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tcagatccccacacttggcaggcaagcactttaggtcagccttctcccagccccagagac 487
Query: 181 taggctcttatataacgtttctaaaccaaaccataaggtgtttcctctgcaggttgacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 taggctcttatataacgtttctaaaccaaaccataaggtgtttcctctgcaggttgacat 427
Query: 241 tgtggctagtgtcagtggcctccaggctctaaggcaatctaaaaatcacagt 292
||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgtggctagtggcagtggcctccaggctctaaggcaatctaaaaatcacagt 375
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
