BAC Information

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BAC

Clone NameMSMg01-233F18
Chromosome16 (Build37)
Map Location 17,500,148 - 17,500,461
singlet/doubletsinglet
Overlap geneAifm3
Upstream geneFgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl
Downstream geneLztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233F18.T7 (MSMg01no233_f18.b1)MSMg01-233F18.TJ (MSMg01no233_f18.g1)
ACCAG399591AG399592
length722770
length of high quality
(start - end)
317 (45 - 361)50 (80 - 129)
definitionCHROMAT_FILE: MSMg01no233_f18.b1 PHD_FILE: MSMg01no233_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:03 2005CHROMAT_FILE: MSMg01no233_f18.g1 PHD_FILE: MSMg01no233_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGCCCTGGGCCATAAGTGTCCTCACTATGGAGCGCCCCTGGTGA
AAGGTAAGAAAGTGTGAGGTATACATGGGAGGTGGGCTACACCATCCATG
CCTATATAGGGATTCTAGAAGGCCCCAGGGCCTTCAGTCATTTGTGAGGG
CTCCTGGGTTGGGGAGAGGTCCAGCAGGGTCCAGTCTCTTCTGGGCATGG
CGCTAGACTGGCACTCATTTGTCTCTCCTAGGTGTACTGTCCCGGGGACG
TGTGCGCTGCCCCTGGCATGTTGCCTGCTTCAACATTAGTACTGGGGACC
TAGAGGACTTCTTTTGTTTCTGGACACCCTCCCTAAGTTCCAGGTAGGGC
TGGGAAAGTGACATGGCGGCACCCCCGAGTTGTGGAGTCAGAGACTGAAG
CATCTCACAGTTTGGTGCTGATACTGCCCTCTCAGGCGAAGATTGAGAAG
GATAATGTGACCATTCGGGCAAGCAAGCAGGTACCATGGAGACTCAGGAC
ACCACGGCTCAGGTTTATGAGGAATGCGTTTGAATAAGATGGGAGGGTAT
CCTGCCTGCACAAGATCCTTGCCGCGAAGTCCTGTCTCGGAACGGAAGAT
TGTTTTTGAGCGTCTTACCGTGGCACATTTAATCACGTCTATTTGATTAC
ATCCCGCCAGCATATCCCATTA
NCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGGGTGGAAGGGAATTGG
GGTGGGGAGTGCCGCCCCGCATGCCAGTGCCTGGAATGTGAGCAGGTACC
AGTCCCCCAGATCTCCCTTCTCCTTTTCAGACCTGTGCACAGGAAAGGAG
CGCTCTGCTCTCTTACAGACTATCCTTAGAATTTCCAGCGTGTGTATCCC
TTGATCTCACCGTATTACACCGTGCAACCGACTGTCTGTCACATCTCATT
CATGCCTGACACCCAACTTTTTTTTTATGCGCACCGTCTATGTTCAACCA
AGAATATTTTGGATGGTTTCCCCAACAGGCCCCTGGAATTTTAGAAGATT
GTTTGTGTTGTCCTTTCCCCCATAAAAAAAAAAAAAATCTTCTGGCTGGG
GGCCTTTACCCTCGAATAACGCTGTTTGTATTCTCTGCCCTGCTTGCTCC
TTTTAACACAATCTTTTGATGTCCATTTTATTTAACCCTGTTATTGATCA
AATACATACTATTGTTTCTTGTCTATATTTACACCCCGCTACCATCCTTA
TACTCGTGCACCCTGTATACTAGCACCTTGATAACTCACTTCTTTTTCAC
ACCCCCTCTTTTTTTGTTTTTTTTCTTCTCCCCTGCTTTTTAAATTGAAC
TTTTTCTTAATTGTTTAACAATACCATCTTACTCCCCTCGTGCCACACTG
ACACCTCCACTTTAATCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_f18.b1 MSMg01no233_f18.b1 CHROMAT_FILE:
MSMg01no233_f18.b1 PHD_FILE: MSMg01no233_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:03 2005
         (317 letters)



>mm_chr16_17499945_17500661
          Length = 717

 Score =  569 bits (294), Expect = e-166
 Identities = 309/314 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccatgccctgggccataagtgtcctcactatggagcgcccctggtgaaaggtaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccatgccctgggccataagtgtcctcactatggagcgcccctggtgaaaggtaa 263

                                                                       
Query: 64  gaaagtgtgaggtatacatgggaggtgggctacaccatccatgcctatatagggattcta 123
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 264 gaaagtgtgagatatacatgggaggtgggctacaccatccatgcctatatagggaatcta 323

                                                                       
Query: 124 gaaggccccagggccttcagtcatttgtgagggctcctgggttggggagaggtccagcag 183
           ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 324 gaaggccccagggccttcagtcatttgtgagggctcctgggttcgggagaggcccagcag 383

                                                                       
Query: 184 ggtccagtctcttctgggcatggcgctagactggcactcatttgtctctcctaggtgtac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggtccagtctcttctgggcatggcgctagactggcactcatttgtctctcctaggtgtac 443

                                                                       
Query: 244 tgtcccggggacgtgtgcgctgcccctggcatgttgcctgcttcaacattagtactgggg 303
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 444 tgtcccggggacgtgtgcgctgcccctggcatggtgcctgcttcaacattagtactgggg 503

                         
Query: 304 acctagaggacttc 317
           ||||||||||||||
Sbjct: 504 acctagaggacttc 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)