BAC Information

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BAC

Clone NameMSMg01-234I11
Chromosome16 (Build37)
Map Location 69,228,319 - 69,228,553
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626609
Downstream geneSpeer2, EG664930
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234I11.T7 (MSMg01no234_i11.b1)MSMg01-234I11.TJ (MSMg01no234_i11.g1)
ACCAG400391AG400392
length719721
length of high quality
(start - end)
234 (125 - 358)229 (132 - 360)
definitionCHROMAT_FILE: MSMg01no234_i11.b1 PHD_FILE: MSMg01no234_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:32 2005CHROMAT_FILE: MSMg01no234_i11.g1 PHD_FILE: MSMg01no234_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTCTTGAAACAACAGGATTTTCTAAAATTTGTTAAAAGACTACTTT
ATCTGATGTAGTAATATCTACCCCAAACTATTTTAGACTGTGAATCACAT
AAATAACTGCCATAACTTTCTCCTCTTTTATTATTTTTTTTTATAAATAA
CAGTAGTACATTTAAAATTTCATCTCTATCACTTCTCTTTTTCTTATATT
TTGGAAATTACTAAATAATGCTTCTTTTCTTTATTTTTTTCCCTCCAAAT
CATTCCATATACTTCTTCTTACTGCTCTTGAATGTTTTGTATTGTTATCA
TATACATATATGTATGCACACCACCCCACCACTAAGTCTGTGAAACATAT
TGGTGCACACACACAGAGAAACAAAGGCACACACACACACACACACACAC
CTACCCAGCGTGTACAATGTTATTCACGTGCATTCATTCAATTCTGAACA
TTTGGAATTGGTAACCGGTTGGTATTCTCTTTCCTGGGGAAGATTATTTC
TATGACTATCCACATTTATTACTTGCCTGTAGGTTTTTATAAGCTTGAAG
CCATATGTGCTTTTTTTTCTGCCTACTTTGCCATGTATTCTGCTGTTGTC
CAACTTATGCTTATCATTATTATTTTTCAAAGAATAGAAATATTTTAGTG
CCACCATAAACTTTATCCT
CCGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTGGGTAGTGTTCCTTCTGTTTCT
ATTTTGGAAAATTGTTTGATGAGCACTGGCATAAGGTCTTCTCTGATCGG
ATAGAATTCTGCACTAAAACCATCTGGCTTTAGGCTTATCTTTGGTTGGG
AGAACTTTAATGAGTGCTGATATTTCTTTAGGGCTTTTGGGACTGTTTAG
ATGGTTTATCTGAACCTGTTTTTACTTTGGCACCTGGTATATGTCTAGAA
AATTGCTCATTTGATGTAGTTTTCCAATTATGTTGAGAATAGGCTTTTGT
AGTAGGATTGTTTGTTTTTTCCTCCACCCCCACCGCTATGTCTCCCTTAT
CATTTTTTATTTTATTAATTTGCAAATGGAATCAACGCCCTTTGGCTAGT
CTGGCTAAGGGTTTATCTAACTTACTGATTTTATCAAAGAGCCTGTTCCT
AGTTTTCTTGATTCTTTTCACAATTTTTTGTTTGTTTGCCTGTTCTTTGC
CTCTGTTATTGTTTTTTTCCTTTCGGTGTGCCTGCTTCTCCTTTTGATCC
CCTCCTGATCTTCCCTTATTTCCCACTGTTTACTCACCTTGCCTGCATTT
GACCTCCTCTACCCCCTTATATTTTCCTTTTGTTTTGCTCACGTTGCCCT
CGCTATATTTTTTTTATTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_i11.b1 MSMg01no234_i11.b1 CHROMAT_FILE:
MSMg01no234_i11.b1 PHD_FILE: MSMg01no234_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:32 2005
         (234 letters)



>mm_chr16_69228119_69228753
          Length = 635

 Score =  447 bits (231), Expect = e-130
 Identities = 234/235 (99%), Gaps = 1/235 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaactattttagactgtgaatcacataaataactgccataactttctcctcttttattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaactattttagactgtgaatcacataaataactgccataactttctcctcttttattat 260

                                                                       
Query: 61  ttttttttataaataacagtagtacatttaaaatttcatctctatcacttctctttttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttttttataaataacagtagtacatttaaaatttcatctctatcacttctctttttct 320

                                                                       
Query: 121 tatattttggaaattactaaataatgcttcttttctttattttttt-ccctccaaatcat 179
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 tatattttggaaattactaaataatgcttcttttctttattttttttccctccaaatcat 380

                                                                  
Query: 180 tccatatacttcttcttactgctcttgaatgttttgtattgttatcatatacata 234
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccatatacttcttcttactgctcttgaatgttttgtattgttatcatatacata 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 635
Length adjustment: 9
Effective length of query: 225
Effective length of database: 626
Effective search space:   140850
Effective search space used:   140850
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)