BAC Information

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BAC

Clone NameMSMg01-235E16
Chromosome16 (Build37)
Map Location 81,039,207 - 81,039,372
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621365, LOC100039724
Downstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235E16.T7 (MSMg01no235_e16.b1)MSMg01-235E16.TJ (MSMg01no235_e16.g1)
ACCAG400909AG400910
length747739
length of high quality
(start - end)
168 (530 - 697)---
definitionCHROMAT_FILE: MSMg01no235_e16.b1 PHD_FILE: MSMg01no235_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:35 2005CHROMAT_FILE: MSMg01no235_e16.g1 PHD_FILE: MSMg01no235_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATAAATTCACATTTGCTAAGGGAAGGCTAAGAAGAAGCTTATAG
ATATGGCATGAAATACCATGTTTAGTACTTATTAATATGATGCAATATGC
TAAGAAATCTAATCTTAATCAATGCTTTTGAGTATTTGATGACTCCAGAT
CTCTTTTCGATGGTCTACTATATAATGACACTATCTATAAATTCTGAAAG
CATAGTTGATACTTATGCTAGAAGCCTCCTATAAGCGATTTGCATATGTG
AATATAATAAATCATCACTCATTATCAAAATGAATATCGATACTTCACAG
ATAGAGCTATATTTATTTATATCCGCCCCACCCCCCTACTAAATATTGAC
TATTATATATATATATACACACCTATACACATGAGAAAGAAAAGTGAGAT
GATCATTATAATTCTTGTGTCTTCCTTGATGACATGTTCTTAATGTATAT
ATATCTATATATATATTATGTATGCGCCGTTACATTGTAAACATTTTAAA
CATAGTTTTTCTAATGAATTATAGGGACTCTGGAATTAAGAAAACAGGTA
TATGCCTCTACAGTATATACAATTATTTTCCGGGTTTGATTGGTTGATGT
TTGGTTGAAAACAAAGAGGCAGAACAGACAATTAGGGAAGACTTATTTCA
NAATCATAATACCAGCTTCAAAAAAAGGAAAGTGAATGAAGGATCCT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCCTTTTAAGACTGCTGAGTATGAGTC
CTTTGTGCAAATGCTCCGCAGATTTCTGTAACCATTACACTGCTAAACTT
GATCTGGGCACTTCTTAGATACCTGCTAATATTATTTTGGAAGCTGCGAA
CATAATCAATTAGGCCGCCATCACAATGGTTGTACATTTGTGTATACATG
CCCCTTGCTGATCTGGCTCTGCCCACGGGCAGCTCTGACTCCTGGTATCG
GACTATTCGCCGGAATTCTTGACCGTTCGATACTCGCACTCATGAGAGAT
ACTATAGTTTTCTCTGACCCCCCCCTCCTCGTAGAGTATAGATGGTGCTT
TGAAATCCACGCTCCTACACACCAAAGAATAGAAAAAGATTAGCCGTCTC
TCACATACTCCCTTGCTAAAAAACCCCTTCCAGCCAGTTGGTGGCCATTC
ATCGCCTATAGACCCAGCGCTTGGACTCACAGAAAGTCTGATTTCAGATG
ACGAACCCTTCCTGCACTGCTGAGCGAAATCCATAACACACAGGTGTACT
GTTAAAAATCCTGTCTCCAAGAACCCATGTACTAGAGGCCCTTCCCCAAC
TACTCACCCACCAAAATCCCGGACACTAATAATAGGCGCAGACCCTAAAC
CCACCTAAGACTCAGATTCTGAATTTGTATAGGACAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_e16.b1 MSMg01no235_e16.b1 CHROMAT_FILE:
MSMg01no235_e16.b1 PHD_FILE: MSMg01no235_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:35 2005
         (168 letters)



>mm_chr16_81039007_81039572
          Length = 566

 Score =  284 bits (147), Expect = 2e-81
 Identities = 163/169 (96%), Gaps = 4/169 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttacattgtaaacattttaaacatagtttttctaatgaattatagggactctggaattaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ttacattgtaaacattttaaacatagtttttctaatgaattatagggactctagaattaa 260

                                                                       
Query: 61  gaaaacaggtatatgcctctacagtatatacaattattttccgggtttgattggttgatg 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 gaaaacaggtatatgcctctacagtatatacaatcattttccgggtttgattggttgatg 320

                                                            
Query: 121 tttggttgaaaacaaagaggcagaacagac-aattagggaagacttatt 168
           ||||||||||||||  |||||||||||||| ||| ||||||||||||||
Sbjct: 321 tttggttgaaaaca--gaggcagaacagacgaat-agggaagacttatt 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 566
Length adjustment: 8
Effective length of query: 160
Effective length of database: 558
Effective search space:    89280
Effective search space used:    89280
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)