BAC Information

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BAC

Clone NameMSMg01-235H06
Chromosome16 (Build37)
Map Location 17,498,243 - 17,498,539
singlet/doubletsinglet
Overlap geneAifm3
Upstream geneFgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl
Downstream geneLztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235H06.T7 (MSMg01no235_h06.b1)MSMg01-235H06.TJ (MSMg01no235_h06.g1)
ACCAG401019AG401020
length708738
length of high quality
(start - end)
298 (43 - 340)288 (57 - 344)
definitionCHROMAT_FILE: MSMg01no235_h06.b1 PHD_FILE: MSMg01no235_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:47 2005CHROMAT_FILE: MSMg01no235_h06.g1 PHD_FILE: MSMg01no235_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTCCTATTTCCAGAGGATCCGCGGAATTCCATAGTTGACATCAACTGTC
TATAACTATAGTCCCATAAGATCTGATGCCCCTTCTGGTATATAGACCCC
CATATAGACAAAATATGTACATGCATAAATAAGTTATTATTATTATTATT
TTGGTTTTTTGAGGCAGGGTTTCTCTGTGTAGCCCTGGAAGTCCTGGAAC
TCACTCTGTAGGCCAGGCTGGCCTTGAACTCATAAATCCTCCTGCCTCTG
CCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACCGCCTGGCTTGTA
TTTATTTTTTAAAAGTTGTATCGATAAAGAAAAAGTTGATATTTTGTCGC
GCCCTTTGCCTTCCTTTTTGTGGCATTGGGCCACTGATCCCCCCGTCACC
CATGCCAGGACATTCTGCCACTAAGACTGGCCCAGCCTGAGTACATTTTT
TCCTCAGGTTGGCTGCAGACTCTTATGTACCTGAGGAGGACCTTACATTC
CTGATCCTCCTGCCCTGCCTCCTAAGTCGGTATCACAGGTGGGCTCTGTT
ATGCCGCGTGGGTTTTAAGCTTTGATTTGTTCGCTCTTACTGCTGTTGTT
GCATCCCCGAGTATTGGTTAAAGCCTGTGCATGCCTCTAGCCCTGCTACA
CCTGAGCTATCGGACAGTCGTGATTTTCTTAATTTTTTAGTTTTTGACAT
TCTATTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC
TCTGCCCCCACGTGTGCCACCACGCCTGGCCCTGGGAGAATGTTTTGCTG
AGAAGAGACACGTGGTGTTTTTCTGGAAACAGCCTGGAAAAAGGGCATGT
GCTGTTTTGCTAGAGCAGGCGCTTGAGAGAACACAGGATGTTTGGGAAGG
ATATAAATATAGCTCAAAACAGAACCTGTTGGCTCACCTTGCCACTCTTG
TGTTCTGGTGGTTTCTTGCTGCTTCCACAGCCTCAGGCCAATTGTTTTTT
CCTCCCACCTTCTCCTGCATGAACTGCCATTGCTGAATTGTGAATGGCCC
CCCCGATGAATGAAACTACCGTGCTGATTCCTGTGAACTGAACTGCTGCC
CTCCTGACAAAGATTGAAAATGCCCCAAAGATCTATTTCTAAACAGGTCC
ACATTCCTCCTTTGCCCTATTAACCTTCCTCTCCACTACCTCTAGTTGGG
TGGTGGTTTTTTAGGTTATTTTAAAGCATTTAACCTCCCTTTTTCTTACT
TTACCCTTTCGTTCCTTGTTTTTTCCATTCTTGTTTCCCTATTTTTGCCC
CTTTACCTCCGCTTATTATTTTACGCTTTCTCCCCTACCTCCTCTTAACA
TCCTCGTGTTTATCATTAACATCCGTTTTTCCCCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_h06.b1 MSMg01no235_h06.b1 CHROMAT_FILE:
MSMg01no235_h06.b1 PHD_FILE: MSMg01no235_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:47 2005
         (298 letters)



>mm_chr16_17498043_17498740
          Length = 698

 Score =  505 bits (261), Expect = e-147
 Identities = 288/301 (95%), Gaps = 8/301 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caactgtctataactatagtcccataagatctgatgccccttctggtatataga----cc 56
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||    | 
Sbjct: 201 caactgtctataactatagtcctataagatctgatgccccttctggtatatagatatac- 259

                                                                       
Query: 57  cccatatagacaaaatatgtacatgcataaataagttattattattattattttggtttt 116
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ---atatagacaaaatatgtacatgcataaataagttattattattattattttggtttt 316

                                                                       
Query: 117 ttgaggcagggtttctctgtgtagccctggaagtcctggaactcactctgtaggccaggc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttgaggcagggtttctctgtgtagccctggaagtcctggaactcactctgtaggccaggc 376

                                                                       
Query: 177 tggccttgaactcataaatcctcctgcctctgcctcccaagtgctgggattaaaggcgtg 236
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tggccttgaactcagaaatcctcctgcctctgcctcccaagtgctgggattaaaggcgtg 436

                                                                       
Query: 237 tgccaccaccgcctggcttgtatttattttttaaaagttgtatcgataaagaaaaagttg 296
           |||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgccaccaccgcctggcaagtaattattttttaaaagttgtatcgataaagaaaaagttg 496

            
Query: 297 a 297
           |
Sbjct: 497 a 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)