BAC Information

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BAC

Clone NameMSMg01-235I20
Chromosome16 (Build37)
Map Location 64,219,925 - 64,220,237
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha3, LOC100043540
Downstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235I20.T7 (MSMg01no235_i20.b1)MSMg01-235I20.TJ (MSMg01no235_i20.g1)
ACCAG401090AG401091
length713704
length of high quality
(start - end)
313 (36 - 348)285 (58 - 342)
definitionCHROMAT_FILE: MSMg01no235_i20.b1 PHD_FILE: MSMg01no235_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:55 2005CHROMAT_FILE: MSMg01no235_i20.g1 PHD_FILE: MSMg01no235_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCTT
TTTTTTTTTGAGTGTTTGATGACCATTGCTTGGAGGTTATTCACACTGGA
CTTAGTTCTTTCTTTTTCCACAGAGTCACAGTTCCTTCTACATTTGAATC
TCTTCTTGCTTTCAGTGGAAGTCATACAGGTCATGGTATCTTCACTTAAA
AAAAGGATTGTGAAACATCTTGTAGTTTCTCATCTATGATAATCTCAGTT
GCTTTTCAGAAGCCTTTAAAATCACTTCCTGCCATAGTGGTTCTGAATTT
TAGTGTAGAATTCCTTGACATATTGTTTACAATCCAACTAAGTCCTGTTT
CATTATGACCCGCCCGCCTCTCAGTTTTAAAATTCCTATTTATAAAACCC
CAAAGAAACACACAGGACTTGCCAAATTGTTTTGCAAATGTTATAATCAA
GTTACTTTATGCTTTCTTCAGATATTTGTGCTATTTACAAGCTTCAAATT
AACAATTACTTTTTAATTTTATTTTTTATTAGATATTTTCTTTATTTACA
TTTCAGATGTTATCTCCTTTCCTGGTTTCCTCTCCGAAAACTCCTATCTT
CTCCCTCCCCCCACTGCCCTGCTCATCAACGCACCCACTTCTGTTCCAGG
TCCTGGCATTCCCCTACACTGGGGCATAGAGTCTTCACAGGACCAAAGAC
CTCTCTTCCCATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCCTAACAGGGACTGGAATCAGCCCAGGAAAAGAACTTTGTTG
CAGCCAATGAAGATGAAAAAGGATGTGGAGATCTGAAGACCTCTTTGACA
TTAGACATGGACATGCAGAGTTTGGAGTTTTCCCAGCTGGTTTCCTGTCT
TGCTTTGGGGATTGCAGTTAAATGATTGGATGGATCTCAGAAGAGGCTTT
GAACTTTGGACTTTTCATTGTTGAGACTGCTATAGACTAGGGGGCTTTGG
ATGTTGCACTAAATGTACATTTTATTATGCTATGGTGAGATATTTCTGAC
CCCCCCCCATGTGTTTGGACAAGCCTATGGGGGGCAGAGAGTGGAATGCG
ATGGATTATATATACTTGGCCTAGGGAGTAGCACTATTAGAAGGTGTGGC
CTTGGAGTGTGAGTGTCACTGTCGGTTTGAGCTTAACACCCTCATCCGAG
GTGTTTGGAAGTCAGTACTCTGCTAGCAGCCTTCAGATGAAGATGTAGAA
CTCTCAGCTTTGCCTGTTACATGCCTGCCTGGATGCTGGCATGTTCCCAC
TTTGATGATAATGGACTGAACCTCTGAACCTGTTAGCCAGGCCCAATTAA
ATGTTGTCCTTATAAGATTGCTTTGGCCATGGTGGCCCTTCAAAGCTTTA
ATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_i20.b1 MSMg01no235_i20.b1 CHROMAT_FILE:
MSMg01no235_i20.b1 PHD_FILE: MSMg01no235_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:55 2005
         (313 letters)



>mm_chr16_64219712_64220424
          Length = 713

 Score =  574 bits (297), Expect = e-168
 Identities = 307/313 (98%), Gaps = 5/313 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatc-----tttttttttttgagtgtttgatgaccattgcttggaggttattcac 59
           |||||||||     ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaattcatcttttttttttttttttgagtgtttgatgaccattgcttggaggttattcac 467

                                                                       
Query: 60  actggacttagttctttctttttccacagagtcacagttccttctacatttgaatctctt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 actggacttagttctttctttttccacagagtcacagttccttctacatttgaatctctt 407

                                                                       
Query: 120 cttgctttcagtggaagtcatacaggtcatggtatcttcacttaaaaaaaggattgtgaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 cttgctttcagtggaagtcatacaggtcatggtatcttcacttaaaaaaaggattgtgaa 347

                                                                       
Query: 180 acatcttgtagtttctcatctatgataatctcagttgcttttcagaagcctttaaaatca 239
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 atatcttgtagtttctcatctatgataatctcagttgcttttcagaagcctttaaaatca 287

                                                                       
Query: 240 cttcctgccatagtggttctgaattttagtgtagaattccttgacatattgtttacaatc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cttcctgccatagtggttctgaattttagtgtagaattccttgacatattgtttacaatc 227

                        
Query: 300 caactaagtcctg 312
           |||||||||||||
Sbjct: 226 caactaagtcctg 214


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)