Query= MSMg01no236_f20.b1 MSMg01no236_f20.b1 CHROMAT_FILE:
MSMg01no236_f20.b1 PHD_FILE: MSMg01no236_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:55 2005
(674 letters)
>mm_chr16_40169565_40170638
Length = 1074
Score = 1220 bits (631), Expect = 0.0
Identities = 660/670 (98%)
Strand = Plus / Plus
Query: 5 gaattcatatccctgccctatgggagaaatctagagaaatagaacctatgcagtttttat 64
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatatccgtggactatgggagaaatctagagaaatagaacctatgcagtttttat 264
Query: 65 tagttgataggactcctaataaaatgtcccatttttctgtttctgttctaaattcaatac 124
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 tagttgataggactagtaataaaatatcccatttttctgtttctgttctaaattcaatac 324
Query: 125 aaaaatgaaagctaatactttaagtatttctcttatttccaggttgctgtgtttttctta 184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagatgaaagctaatactttaagtatttctcttatttccaggttgctgtgtttttctta 384
Query: 185 ccaatatctgtttcttactgacagattttattctgaagtttttgaaataagaacttgaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccaatatctgtttcttactgacagattttattctgaagtttttgaaataagaacttgaag 444
Query: 245 ttatctgtctatccaggcaaaaaccctagcgagccttgtgacattgaatgaaaattctta 304
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 tgatctgtctatccaggcaaaaaccctagtgagccttgtgacattgaatgaaaattctta 504
Query: 305 gaacactctattgattaaaaaaatatactggacaagaggatttgtattccctttctgcct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaacactctattgattaaaaaaatatactggacaagaggatttgtattccctttctgcct 564
Query: 365 gaagttcaattttccccttcatttgctaaaaggtttgctgtcctggagcatggaatggat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaagttcaattttccccttcatttgctaaaaggtttgctgtcctggagcatggaatggat 624
Query: 425 ctgtgctctttgccatggtgggacaaaccagagttgactgggtaccctgcccatagtcat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgtgctctttgccatggtgggacaaaccagagttgactgggtaccctgcccatagtcat 684
Query: 485 gcaaacagtgagccatggctcactgggctgatagccttctaccaatagcagtgatttttt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcaaacagtgagccatggctcactgggctgatagccttctaccaatagcagtgatttttt 744
Query: 545 gaatagcagcaacattgcacatttcaaacatatggaatctctggtctctcctctttctaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaatagcagcaacattgcacatttcaaacatatggaatctctggtctctcctctttctaa 804
Query: 605 tgctcactgaaactttgagtaaatacatacattccacagggaaattgagaatagaactca 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgctcactgaaactttgagtaaatacatacattccacagggaaattgagaatagaactca 864
Query: 665 natatagtaa 674
|||||||||
Sbjct: 865 aatatagtaa 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_f20.g1 MSMg01no236_f20.g1 CHROMAT_FILE:
MSMg01no236_f20.g1 PHD_FILE: MSMg01no236_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:55 2005
(647 letters)
>mm_chr16_40219581_40220627
Length = 1047
Score = 924 bits (478), Expect = 0.0
Identities = 485/488 (99%), Gaps = 2/488 (0%)
Strand = Plus / Minus
Query: 160 ggtaagtagcaactcaaagtcaccatctaattttagaaatacttttacatttatacaaac 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 ggtaagtagcaactcaaagtcaccatctaattttagaaatacttttacatttatacaaac 988
Query: 220 aatcctctttccccaaagtatccatgtgtgtgtaatatatacatatgtgtctatacatat 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 aatcctctttccccaaagtatccatgtgtgtgtaatatatacatatgtgtctatacatat 928
Query: 280 atatgcatatgtatatatatatatatgtatatatacacatatacatatatgtatatatgt 339
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 atatgcatatg--tatatatatatatgtatatatacacatatacatatatgtatatatgt 870
Query: 340 atgtgtgtatctatatatctatatctatatattacacacacatgcacacacattcacata 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 atgtgtgtatctatatatctatatctatatattacacacacatgcacacacattcacata 810
Query: 400 caggattgctcaatcacagattgctttttttttaatcactctccaagtgaatcacatcct 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 caggattgctcaatcacagattgctttttttttaatcactctccaagtgaatcacatcct 750
Query: 460 atcttctttgtacaagtaggatataaatgacagagcctaggacctagtcttcttctaaaa 519
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 749 atcttctttgtacaagtaggatataaattacagagcctaggacctagtcttcttctaaaa 690
Query: 520 aaaatactcataggtcactactcagaatagcccttcagaaaaatcctactaattaatatt 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aaaatactcataggtcactactcagaatagcccttcagaaaaatcctactaattaatatt 630
Query: 580 taaaacactgtcttataatagtttctaactgtttagatagattttaaaataaaacacaaa 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 taaaacactgtcttataatagtttctaactgtttagatagattttaaaataaaacacaaa 570
Query: 640 aacgtggc 647
||||||||
Sbjct: 569 aacgtggc 562
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
