BAC Information

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BAC

Clone NameMSMg01-236G18
Chromosome16 (Build37)
Map Location 24,525,294 - 24,525,580
singlet/doubletsinglet
Overlap geneLpp
Upstream geneLOC100043018, Rtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik
Downstream geneA730098P11Rik, 5430420C16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236G18.T7 (MSMg01no236_g18.b1)MSMg01-236G18.TJ (MSMg01no236_g18.g1)
ACCAG401683AG401684
length746745
length of high quality
(start - end)
263 (45 - 307)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no236_g18.b1 PHD_FILE: MSMg01no236_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:59 2005CHROMAT_FILE: MSMg01no236_g18.g1 PHD_FILE: MSMg01no236_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAATAGTGGAATCTCAATGTTTCAGAAACATTAAAGAAATTTTCA
ACATCCTTAGCCATCAGGGACCTTCAAATCCAAACACCTTGGAGATTCCA
TCTTACACGTGTCAGGATGGCTAAGATCAAAAACCCAAGTGATGGCACAT
ACTGCCAAGGATGTAGAGCAAGGGGAGCACTCCTGTCCTGCTGGTGGGAG
TGCAAAGGATAGCCCGTTCAGGCTCCATGCCCCCATTACTACAGAGTCTC
TGCTAGTGGCGCCCACATATACTCAAATGGCAACCTACAGCAACGGGAAA
AGATTTTTATCTTTTCCACCCCCGACCCCCCATGTATGAAACTCTAGAAT
CTAAACAACAACACGCCAAATAAAAAAAAAAACATTCGTCATGCCTGCAG
GATGTGCTGGGACCAAACTATCAAGTCTTTGATTCGCTTGGACTTGATTC
CAAGTTCAAATAAGGGAACCCAGACCATTGCAAGATAAACCTGCTGTGTA
CTCACTTACAATTGGATATTATCTGTAAAGGATACTTCTACTATAATTCA
TACCTAGAGAGGCTACAAAACACTGAGGGACTAACGTGTTGAGGAAAACA
GGGATCTTCTTATGAAGAGGACAAAGACTCCACTTTTGCTTGTACCTAGT
CGCACATGCGGATCGCAATCATGTTAATCACGTGCTAAGAACGAAG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGTACAGGGGAAGGGTACAGAG
TTTGCATTCCTTTACCACAAAGCCCGAGGATGATGAACGTGTATTTTTTT
CATAGTGCCACTCCACACTAAGCTAGCATGCACAGTTACAACACACACAG
AAGGCGCAACTGGGGAAGCACAGGCCAAGCCTGACGCTCACATGAGTTCT
TCCTGGGAGTAGACAGGAGGAAATTTGAACAAACCCTGCTGCTGCTTGGA
GGATCTTTTAATTTACTGAGGGACATCTCAAGTTGCGTTTTCCAAGTGTC
CTGTGGGGTTTTTTTTAGCACCCCCCCCCCTTGACAACCTTCTGTTTTCA
AACAAAGGACATACATAGAAGCTCACAAAAAAAAAAAAAAAAAAAAGACT
CCTATGTGGCAGTAACTGGCAGCCCAGTTACCTCACCTTTTCAGAGATGG
AACTTCCCTCACACCTTGAAGCTTGTTCACCACACACAAGCAGAGAATGT
ATCCAGGAGCTAGTCCTGCACCATCTGAACACGTGCTATTACCTAAGAAG
AACAAAATGTTTCCTGTCCTCAACACCTTGAAGGGAGGAAAGGTTACGTT
GAACAAAGTACCTTATGTTTCAAGCCTTGCCTGCCTCTGCAGCCATCTGA
CCTCACGTCCTGACACCAAGAGAAACTCTAGACAGAATCATGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_g18.g1 MSMg01no236_g18.g1 CHROMAT_FILE:
MSMg01no236_g18.g1 PHD_FILE: MSMg01no236_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:59 2005
         (286 letters)



>mm_chr16_24525094_24525780
          Length = 687

 Score =  485 bits (251), Expect = e-141
 Identities = 278/287 (96%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagtacaggggaagggtacagagtttgcattcctttaccacaaagcccgaggatgatga 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 487 ctagtacaggggaagggtacagagtttgcattcctttaccacaaagcaagaggatgatga 428

                                                                       
Query: 61  acgtgtatttttttcatagtgccactccacactaagctagcatgcacagttacaacacac 120
           ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 427 acgtgtatttttttcatagtgccactccacattaagctagcatgcacagttaaaacacac 368

                                                                       
Query: 121 acagaaggcgcaactggggaagcacaggccaagcctgacgctcacatgagttcttcctgg 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 acagaagacgcaactggggaagcacaggccaagcctgacgctcacatgagttcttcctgg 308

                                                                       
Query: 181 gagtagacaggaggaaatttgaacaaaccctgctgctgcttggaggatcttttaatttac 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gagtagacagcaggaaatttgaacaaaccctgctgctgcttggaggatcttttaatttac 248

                                                          
Query: 241 tgagggacatctcaagttgcgttttccaagtgtcctgtgggg-tttt 286
           ||||||||||| || ||||||||||||||||||||||||||| ||||
Sbjct: 247 tgagggacatcacaggttgcgttttccaagtgtcctgtgggggtttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 687
Length adjustment: 9
Effective length of query: 277
Effective length of database: 678
Effective search space:   187806
Effective search space used:   187806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)