BAC Information

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BAC

Clone NameMSMg01-260J15
Chromosome16 (Build37)
Map Location 33,945,191 - 34,076,679
singlet/doubletdoublet
Overlap geneItgb5, Umps, Kalrn, LOC100043670
Upstream geneLrch3, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4, Zfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13
Downstream geneRopn1, Ccdc14, Mylk, Ptplb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260J15.T7 (MSMg01no260_j15.b1)MSMg01-260J15.TJ (MSMg01no260_j15.g1)
ACCAG403221AG403222
length740745
length of high quality
(start - end)		242 (68 - 309)522 (77 - 598)
definitionCHROMAT_FILE: MSMg01no260_j15.b1 PHD_FILE: MSMg01no260_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:44 2005CHROMAT_FILE: MSMg01no260_j15.g1 PHD_FILE: MSMg01no260_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,076,438 - 34,076,679)(33,945,191 - 33,945,712)
sequence
AAAATTTGCGGCGCTAAACGACTCCTATTTCCGAGGTGCGCGGAATCCAG
TCCTTAACTAGAAAGAAAATGCCTTGCCCCCTGAGCCTACCCCTTTCCCA
GGTCCTTTTTTTTTCTTTTTTTAATGTTTCATTAAACTTTTTTGCTTTTC
TAAAATCCCTGCAATAAAAATTACTTTTATAACTAAAAAGAAATGACAAA
ATTAAAGCTTAAGTGGGTGAGAGTGTAAAGATGTCATAAATGAGTATATA
GTCCCACACTGTGAGGCAGCCTCAAGGCTCTGTCCTCCAAGTGCTGGAAT
GAGTATCTCCTTGNATGCTTGAGAAATGCACATCACAAGTGCAGCCCCTC
CCTGTCCTGTTCCTCACCCAGCTGTGTCCTTAGTCATTTGTGTGTCATTT
CCACAGCCGCTATACTGGGAACATTGCAGGCAGTTCCTTCAGCCCCAGTT
TTCTGAGACTTTGGGTGTCATGCTGTATTTTACTTATCGCTGAGTTTTGG
TAACTGGGTTATTTTAGGTGCCATGCATTTGTCAGAACTTATATGCTCAA
GGAGCTTAAAAAATTTTTTTTAGATTTATTTTGCGTGCGTGCATATGTCC
GCATCTATGTGTGTGCATGTGTACTTTGTGTGAGTTTATGCACACCTGTT
TTTTTTTTATTTTTACAGACCCTATGTTTCATTTGTAACTGATACGCCCT
CCCCCTGGCTATCACCTTCCGCCCTGATATTCGAAAAACT

CCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCAGCCCCTCACATCCCAGCC
TTTTGCTCTTTCCATGGCTTGCTCTCCAGGGCCCTGGCTGAGCTCTTTTT
TCATGAAGCACATGTAGTGAGGAAAGAAGGGTTCCCTTCCCACCTCCCAC
AAACAAGCCTGTCCTATGTGGGACAGCTTCTTCCTACCAGACCCACCACG
AGGTATCTGCAGAGAAGTATGCGTCTAAGTTACCGTCTGCCCCTAGACAG
GCTTTCCTTCTTTCCTTATTTATTTACTTGTTTGTTTGCTTGCTTCTTTA
CTTATTTTCAAGGCAAGGTCTCACTATGGGAGTCCTGGCTGACCTGGAAG
TCACTATGTAGACTGAGCTGGCCTCCAGCTCACAGAGACCCACCCGTCTC
TGCCTCATGGGTGCCAGGATTAAAGCTGTGCGCCACCATGCCCAGCCTTA
TTATTTTGTTCCTATTTTTATATTTTTCTCACTATATATCCCACTTCAAA
GTTTCTGTCCTCCTGTCTCAGACTCCCAAGTACTGGGATTATAATTGGGT
GCCGTGGCATCCAGTTCTTCCTTGTGCTTTTAATAATACGCTCTCACTAA
GTCTGAGGGGGACTGAGAAAACAGTTGGACCATCATGGTTGGGAACCACG
CCAGGTGTCCATCTACTTCCTACCTGAAACCCCCTGCTGAAAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_j15.b1 MSMg01no260_j15.b1 CHROMAT_FILE:
MSMg01no260_j15.b1 PHD_FILE: MSMg01no260_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:44 2005
         (242 letters)



>mm_chr16_34076238_34076879
          Length = 642

 Score =  437 bits (226), Expect = e-127
 Identities = 238/242 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgccttgccccctgagcctacccctttcccaggtcctttttttttctttttttaatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 442 aatgccttgccccctgagcctacccctttcccaggtcctttttttttttttttttaatgt 383

                                                                       
Query: 61  ttcattaaacttttttgcttttctaaaatccctgcaataaaaattacttttataactaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttcattaaacttttttgcttttctaaaatccctgcaataaaaattacttttataactaaa 323

                                                                       
Query: 121 aagaaatgacaaaattaaagcttaagtgggtgagagtgtaaagatgtcataaatgagtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 322 aagaaatgacaaaattaaagcttaagtgggtgagagtgtaaagatgtcataaatgaggac 263

                                                                       
Query: 181 atagtcccacactgtgaggcagcctcaaggctctgtcctccaagtgctggaatgagtatc 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agagtcccacactgtgaggcagcctcaaggctctgtcctccaagtgctggaatgagtatc 203

             
Query: 241 tc 242
           ||
Sbjct: 202 tc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no260_j15.g1 MSMg01no260_j15.g1 CHROMAT_FILE:
MSMg01no260_j15.g1 PHD_FILE: MSMg01no260_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:45 2005
         (522 letters)



>mm_chr16_33944991_33945912
          Length = 922

 Score =  994 bits (514), Expect = 0.0
 Identities = 520/522 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgcagcccctcacatcccagccttttgctctttccatggcttgctctccagggccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 tttgcagcccctcacatcccagccttttgctctttccatggcttgctctccagggccttg 260

                                                                       
Query: 61  gctgagctcttttttcatgaagcacatgtagtgaggaaagaagggttcccttcccacctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgagctcttttttcatgaagcacatgtagtgaggaaagaagggttcccttcccacctc 320

                                                                       
Query: 121 ccacaaacaagcctgtcctatgtgggacagcttcttcctaccagacccaccacgaggtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacaaacaagcctgtcctatgtgggacagcttcttcctaccagacccaccacgaggtat 380

                                                                       
Query: 181 ctgcagagaagtatgcgtctaagttaccgtctgcccctagacaggctttccttctttcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcagagaagtatgcgtctaagttaccgtctgcccctagacaggctttccttctttcct 440

                                                                       
Query: 241 tatttatttacttgtttgtttgcttgcttctttacttattttcaaggcaaggtctcacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttatttacttgtttgtttgcttgcttctttacttattttcaaggcaaggtctcacta 500

                                                                       
Query: 301 tgggagtcctggctgacctggaagtcactatgtagactgagctggcctccagctcacaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggagtcctggctgacctggaagtcactatgtagactgagctggcctccagctcacaga 560

                                                                       
Query: 361 gacccacccgtctctgcctcatgggtgccaggattaaagctgtgcgccaccatgcccagc 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 gacccacccgtctctgcctcatgggtgccaggattaaagctgtgcaccaccatgcccagc 620

                                                                       
Query: 421 cttattattttgttcctatttttatatttttctcactatatatcccacttcaaagtttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttattattttgttcctatttttatatttttctcactatatatcccacttcaaagtttct 680

                                                     
Query: 481 gtcctcctgtctcagactcccaagtactgggattataattgg 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcctcctgtctcagactcccaagtactgggattataattgg 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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