BAC Information

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BAC

Clone NameMSMg01-260M12
Chromosome16 (Build37)
Map Location 33,124,312 - 33,124,573
singlet/doubletsinglet
Overlap geneLmln
Upstream geneLrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a
Downstream geneLOC638791, Osbpl11, Snx4, Zfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, Kalrn, LOC100043670
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260M12.T7 (MSMg01no260_m12.b1)MSMg01-260M12.TJ (MSMg01no260_m12.g1)
ACCAG403352AG403353
length765732
length of high quality
(start - end)
271 (55 - 325)332 (80 - 411)
definitionCHROMAT_FILE: MSMg01no260_m12.b1 PHD_FILE: MSMg01no260_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:59 2005CHROMAT_FILE: MSMg01no260_m12.g1 PHD_FILE: MSMg01no260_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CANNNCGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAG
GAGCCGCGGAATTCTCTAACTGCCAGTCCTCTTGGAAGTGATGACATGCC
TGCCCACATCTAAACCTTTAAACTTTACATAGGCCAGAAAGGATCAGTTG
GGCTTTGATGGATTCGTGGGTTTTGTAAATATTACCTGAAGCACAACCGC
GCGCCCTTCTGTTCGCATGACTTCAATCCCCTGACCGCACACTGTACTTC
ATGCTCTCCCACCGTTTTCCAAGTTGCTATGAAATCAATGAGGAAAGCAA
GTGGACACTCAGCTCACACGGAGAAGTTTGATCAGGCACAGAGGGCTAAC
GACATACTGACAACAGCTTGGCAAGCCGCCAGGAAAGGCAGACACAGTCA
AGTCAGCCGCGTTAGTGTCTCCCCCCCAGGGATGATTTGAGAGTGTCGTA
ACCAGACGTTCATTTAAAACAGGCGCAGTGGGGGTGGTAAGTCTGAGATC
CTGAGGACCAGTTTCGTACTGTGTAGGATGTCATCTTCTTTTTACACTCT
TGACCCCTGATTGACTTTTATGCTCCCGTACGCCCAGTTTATCGTCTCTA
TCTGACGTACGTGAACGCTGGGTAATTCCTCTCATTCCACCCGTTATTAT
CTGGTACACTCGCCCTCGCACATCGTCTTACCTCCATCACCTTCTATGGT
TTATTCCGTCCTTTTCTCTTCCCCTATTCTTTCCTTCTCTATCTCTCCTA
ATTCCTCTCTCACCT
NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTTGCCATATTTACATAGA
AAGTACCTTTACCCACTGAGCCATCTCATTGGACCATGGAAATAGTTTGG
TACCCAGTTTATATGCCTTAAAAACAATCTATCCCTGGGGCTGGTGGGGT
GACAAATCATTGAAAGCGTATGCTGCTTTTTCAGGGAGCTTGAGTCCAGT
TCCTAGCATCCCTGTCAGACAGCTCACAACTGCCTGTAATTGCAGCTCCA
GGGGAATTTGACGCCCTCTTCTGGTTGCTTTGGGTGCTGCACTCAACACC
CATAAACCCACTCTGACACACATGTAGACACTTAATTAAAAAATAAAAAT
AAAACCTTAAAGCATACAACCCACTCCTTATATTTAGTTCTAAGTTTTTA
AAATCTCATTAAAAATAACACTAGAGAAATTTTATGTAAATGTTAAGTAT
TTTTCTTAATAAACATATAGCAGTAGATTATTATTGGATTATAAATTTTT
TAAAGGTCCATGAAATATGTTAATCAACAAAAAAGATCTTGAAAATGGGC
AGACATGGCTCTGAAAGAATTATTATGGGGTTAAATTTACATGGTAAGGC
TGGAGAGATGTCTCATTATTTAGGATCACTGACTGCTCTTCCATGGGTTC
TTATTTCAATTCCCAGCACCCACATGGTGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_m12.b1 MSMg01no260_m12.b1 CHROMAT_FILE:
MSMg01no260_m12.b1 PHD_FILE: MSMg01no260_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:59 2005
         (271 letters)



>mm_chr16_33124191_33124862
          Length = 672

 Score =  408 bits (211), Expect = e-118
 Identities = 252/269 (93%), Gaps = 8/269 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctaactg-ccagtcctcttggaagtgatgacatgcctgcccacatctaaacc 62
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggaattctctaacagcccagtcctcttggaagtgatgacatgcctgcccacatctaaacc 324

                                                                       
Query: 63  tttaaactttacataggccagaaaggatcagttgggctttgatggattcgtgggttttgt 122
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 323 tttaaactttacataggccagaaaggatcagttgggctttgatggattcccgggttttgt 264

                                                                       
Query: 123 aaatattacctgaagcacaaccgcgcgcccttctgttcgcatgacttcaatcccctgacc 182
           |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct: 263 aaatattacctgaagcacaatcgcgcgcccttctgttcgcacgacttcaaccccctgacc 204

                                                                       
Query: 183 gcacactgtacttcatgctctcccaccgttttccaagttgctatgaaatcaatgaggaaa 242
             |     |||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 203 --a-----tacttcatgctctcccacggttttccaagttgctatgaaattaatgaggaaa 151

                                        
Query: 243 gcaagtggacactcagctcacacggagaa 271
           |||||||||||||||||||||| ||||||
Sbjct: 150 gcaagtggacactcagctcacatggagaa 122


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 672
Length adjustment: 9
Effective length of query: 262
Effective length of database: 663
Effective search space:   173706
Effective search space used:   173706
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)