BAC Information

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BAC

Clone NameMSMg01-261P19
Chromosome16 (Build37)
Map Location 78,504,224 - 78,695,576
singlet/doubletdoublet
Overlap geneD16Ertd472e, LOC100039605, 4930570E03Rik
Upstream gene2810055G20Rik, LOC435483, LOC100039561, Cxadr, Btg3
Downstream geneChodl, Prss7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261P19.T7 (MSMg01no261_p19.b1)MSMg01-261P19.TJ (MSMg01no261_p19.g1)
ACCAG404216AG404217
length740717
length of high quality
(start - end)		292 (73 - 364)520 (76 - 595)
definitionCHROMAT_FILE: MSMg01no261_p19.b1 PHD_FILE: MSMg01no261_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:30 2005CHROMAT_FILE: MSMg01no261_p19.g1 PHD_FILE: MSMg01no261_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,504,224 - 78,504,514)(78,695,057 - 78,695,576)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCTCTTGGTATTACGCCCAGACTTGGTATCTTTTCTAGTATTACTTCC
TGGGATGGGTGGTAGACTTGTCCCTATGTCCAGCATCAGTTGTACCCTCC
CCGACTCCCCACAGAGCCACCTCCAGTTCCTTTTCAGTTCCATCTCCAGG
CCTGGCTTCTCTTCCTCTGAGGAACTGCTCATCCCCTTTCTGACTCTGTC
AAGGTTTTCTTCACTCAAGTTTCTGTGAACAGGGTTGGACTGTTGGTACG
TCCTCTGGACTCTGTGTAAGTCTTTACATTCCTCTAAGGTGACGGCTTGC
TTACCTCCTCTTGTTTTTAATCGCCTNACCCTGCCCGGGNTGACTGAAGC
ACTGCACACGCAGGTGGACTAAGGCTCAGCAAATAATCAGCAAAGGGAAC
TGTTGAACTCTTTCTACACCAGGGAAGTTTTGTCCCTGTGAGATGCAATG
ATTGACTTCAAATCTGGCCAAGCATCTTGTTGGCTACTGCGTTATGTTCC
TGACTGCATGCAGTCAGGATCTGTGGTGAGTAAAACAAAACAAGACAAGA
CAAGACAAGACTAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGA
CTAGACAAGACTAGACAAGACAAAACAAAACAAAACAAATCATAATAAAA
CAAAACAAAACAAAAACCTGAAGTAAAAAACACACACAAG

NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGGAGCAAGCTGGCTAGGTAGACT
CCTGAACCCCAGGTCCAGCAAGAGACCTTCCCTCAGAGAAAGAAGTGGAG
AGCAGTTTAGGACAACATCCAGTATTAACTCAGGTATCTCTATTCACACT
CAGGAACACAAAGGGGTATACATAGCCATGTGCATGTCCATCCACACACC
CGCAAGCACATACAGTCACGGGGAGCAGCACACACAAGAAAAAAAAAAGA
AAGAAACAAACAAACCGAATCCCATCCTGACTCTGATGGAAGATGAGGAC
ATTCATAAGTTCGGACATTTTCTGAACATAAAATTGTCTTGTGCTCATGA
AGTTATCTACAGCCTCTGCACAAGTTCTCTCAGTGTTTCATCACAAATAA
GGGAGTGGCCTATGATGCCCCACCCTTCCCAGAAGGGTTTTAGCAACTAA
GTCTTGTGGAGGGTGTCACTTTCTTCAGTCGAGTAGACACAGATTANATT
GCCATTGCTCCAATGAAAAACACTCCATCCATACTTGGGCATGCAATTAT
AATGAAATGCAGTGTGCCACACAAAATGAAGACGTGGAAGTAAGAAGAGG
ATTCTTATAGGAGGGAGCCAGGGAAGGGTTGTGAGGAAGGGGTAACAGCG
AATGTATAACCCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_p19.b1 MSMg01no261_p19.b1 CHROMAT_FILE:
MSMg01no261_p19.b1 PHD_FILE: MSMg01no261_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:30 2005
         (292 letters)



>mm_chr16_78504024_78504715
          Length = 692

 Score =  455 bits (235), Expect = e-132
 Identities = 277/291 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttggtatcttttctagtattacttcctgggatgggtggtagacttgtccctatgtcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 201 acttggtatcttttctagtattacttcctgggatgggtggtagacttgtcagtatgtcca 260

                                                                       
Query: 61  gcatcagttgtaccctccccgactccccacagagccacctccagttccttttcagttcca 120
           ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 gcatcagttgtgccctccccgactccccacaaagccacctccagttccttttcagttcca 320

                                                                       
Query: 121 tctccaggcctggcttctcttcctctgaggaactgctcatcccctttctgactctgtcaa 180
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 tctccgggcctggcttctcttcctctgaggaactgctcatcccctttctgactcagtcaa 380

                                                                       
Query: 181 ggttttcttcactcaagtttctgtgaacagggttggactgttggtacgtcctctggactc 240
           ||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 381 ggttttcttcattcaagtttctgtgaacagagttggactgttggttcgtcctctggactc 440

                                                              
Query: 241 tgtgtaagtctttacattcctctaaggtgacggcttgcttacctcctcttg 291
           |||| |||||   |||||||||||||||||| |||||||||||||||||||
Sbjct: 441 tgtgaaagtcagcacattcctctaaggtgacagcttgcttacctcctcttg 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no261_p19.g1 MSMg01no261_p19.g1 CHROMAT_FILE:
MSMg01no261_p19.g1 PHD_FILE: MSMg01no261_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:30 2005
         (520 letters)



>mm_chr16_78694950_78695869
          Length = 920

 Score =  953 bits (493), Expect = 0.0
 Identities = 513/520 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggagcaagctggctaggtagactcctgaaccccaggtccagcaagagaccttccctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ctggagcaagctggctaggtagactcctgaaccccaggtccagcaagagaccttccctca 568

                                                                       
Query: 61  gagaaagaagtggagagcagtttaggacaacatccagtattaactcaggtatctctattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gagaaagaagtggagagcagtttaggacaacatccagtattaactcaggtatctctattc 508

                                                                       
Query: 121 acactcaggaacacaaaggggtatacatagccatgtgcatgtccatccacacacccgcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 acactcaggaacacaaaggggtatacatagccatgtgcatgtccatccacacacccgcaa 448

                                                                       
Query: 181 gcacatacagtcacggggagcagcacacacaagaaaaaaaaaagaaagaaacaaacaaac 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 447 gcacatacagtcacggggagcagcacacacaagaataaaaaaagaaagaaacaaacaaac 388

                                                                       
Query: 241 cgaatcccatcctgactctgatggaagatgaggacattcataagttcggacattttctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cgaatcccatcctgactctgatggaagatgaggacattcataagttcggacattttctga 328

                                                                       
Query: 301 acataaaattgtcttgtgctcatgaagttatctacagcctctgcacaagttctctcagtg 360
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acataaaatggccttgtgctcatgaagttatctacagcctctgcacaagttctctcagtg 268

                                                                       
Query: 361 tttcatcacaaataagggagtggcctatgatgccccacccttcccagaagggttttagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tttcatcacaaataagggagtggcctatgatgccccacccttcccagaagggttttagca 208

                                                                       
Query: 421 actaagtcttgtggagggtgtcactttcttcagtcgagtagacacagattanattgccat 480
           ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 207 actaagtcttgtggagggtgtcactttcttcagtcaagtagacacagattaaattgccat 148

                                                   
Query: 481 tgctccaatgaaaaacactccatccatacttgggcatgca 520
           ||| |||||||| |||||||||||||||||||||||||||
Sbjct: 147 tgcgccaatgaataacactccatccatacttgggcatgca 108


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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