Query= MSMg01no262_m24.b1 MSMg01no262_m24.b1 CHROMAT_FILE:
MSMg01no262_m24.b1 PHD_FILE: MSMg01no262_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:33 2005
(632 letters)
>mm_chr16_23604686_23605719
Length = 1034
Score = 1116 bits (577), Expect = 0.0
Identities = 616/629 (97%), Gaps = 2/629 (0%)
Strand = Plus / Minus
Query: 6 gaattctgtttttactccgttatactttcaggccaacctcctcccctctgcccttttcag 65
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 gaattctgtttttactttgttatactttcaggccaacctcctcccctctgcccttttcag 775
Query: 66 ggcccagtgaggtccttaccagaaagggctgtctccttttgaaattgtctttcagataca 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ggcccagtgaggtccttaccagaaagggctgtctccttttgaaattgtctttcagataca 715
Query: 126 -ccccca-ccctccccatactctgagagatttcctaggcagaaatgtataatcactccct 183
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ccccccacccctccccatactctgagagatttcctaggcagaaatgtataatcactccct 655
Query: 184 tctcaaatccctgaatgctttgcaagaagcttgcaaggtattgaccaaattgtaaaggga 243
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tctcaaatccctgcatgctttgcaagaagcttgcaaggtattgaccaaattgtaaaggga 595
Query: 244 gtcagtcctgccatctcctgcttctgaactcatccaccagttccacccaggagacatggt 303
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 594 gtcagtcctgccatctcctgcttctgaactcacccaccagttccacccaggagacatgga 535
Query: 304 tgggataaagaggatcccttcctgaaccctggaacctgtcggaaggtaccctactcaagt 363
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 534 agggataaagaggatcccttcctgaaccctggaacctgtcggaagggatcctactcaagt 475
Query: 364 attctcaccccaactgcagtgaaagtggttgtcgtcatctgaattcatcactgaagacag 423
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 474 attctcaccccaactgcagtgaaagtggttgtcgtcatctgaaatcatcattgaagacag 415
Query: 424 tgacagacagacaatcacttggaccttggacaccttaacactaagactgagtttattaat 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tgacagacagacaatcacttggaccttggacaccttaacactaagactgagtttattaac 355
Query: 484 ctgggatacataatcctcatccactccaaacctggacataggaactcagaaaaactgatg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctgggatacataatcctcatccactccaaacctggacataggaactcagaaaaactgatg 295
Query: 544 atgggaaactcaggtggacttctactctcttaagtcccttccagggatgaaacagtgaag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 atgggaaactcaggtggacttctactctcttaagtcccttccagggatgaaacagtgaag 235
Query: 604 gtctagggaagagacagaagttagctaat 632
|||||||||||||||||||||||||||||
Sbjct: 234 gtctagggaagagacagaagttagctaat 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1034
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1024
Effective search space: 636928
Effective search space used: 636928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_m24.g1 MSMg01no262_m24.g1 CHROMAT_FILE:
MSMg01no262_m24.g1 PHD_FILE: MSMg01no262_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:33 2005
(620 letters)
>mm_chr16_23482458_23483475
Length = 1018
Score = 998 bits (516), Expect = 0.0
Identities = 582/620 (93%), Gaps = 27/620 (4%)
Strand = Plus / Plus
Query: 1 tctattctaaagcaagtcaaagagtccccccctccccctgcaaggacactgttactattt 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tctattctaaagcaagtcaaagagtccccc--tccccctgcaaggacactgttactattt 258
Query: 61 atagctgctaaaattatgatccttttacattttacatttgaaattacttgggtatgaaag 120
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 259 atagctgctaaaattataatccttgaacattttacatttgaaattacttgggtatgaaag 318
Query: 121 taatggagtagtagctggaaatctatctatctatctatctatctatctatctatctatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 taatggagtagtagctggaaatctatctatctatctatctatctatctatctatctat-- 376
Query: 181 atctatctatctatctatctatattctataacactcaatagcttatttatgtggattatt 240
||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ----------------------attctataacactcaatagcttatttatgtggattatt 414
Query: 241 tctctctagaaccattggcacatgttctagaattaaagctactctatactctctatttta 300
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 415 tctctctagaaccattggcacacattctagaattaaagctactccatactctctatttta 474
Query: 301 tagttacagaaacgttcatggtcttgtaatacgttaggggcacacaaggcaagaactcca 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tagttacagaaacgtccatggtcttgtaatacgttaggggcacacaaggcaagaactcca 534
Query: 361 ggtcaccagagctagtggggttctgtgtgatgactccacagccctaagtcagcggctgac 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 535 ggtcaccagagctagtggggttctgtgtgatgaccccacagccctaagtcagcggctgac 594
Query: 421 ccggaagacttagcaggtgagtgattggcacacagacactcaaggccactgggctctggg 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ccggaagacttagcaggtgagcgattggcacacagacactcaaggccactgggctctggg 654
Query: 481 cctgagcgccaaactagtttcccaaactagcaattccagagctaaagctcatttcagaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 cctgagcgccaaactagtttcccaaactagcaattccagagctaaagctcatttcagaca 714
Query: 541 ttgagatatgcttatattcctttgccacatttgtaccctgtttgaaggtgtgcgtgcgtg 600
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ttgagatgtgcttatattcctttgccacatttgtaccctgtttgaaggtgtgcgtgcgtg 774
Query: 601 cgtgcgtgcgtgcgtgcgtg 620
||| ||||| ||||||||||
Sbjct: 775 cgt-cgtgcatgcgtgcgtg 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1018
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1008
Effective search space: 614880
Effective search space used: 614880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
