BAC Information

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BAC

Clone NameMSMg01-262O03
Chromosome16 (Build37)
Map Location 30,869,361 - 30,992,684
singlet/doubletdoublet
Overlap geneAI480653
Upstream geneGm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122
Downstream geneCentb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262O03.T7 (MSMg01no262_o03.b1)MSMg01-262O03.TJ (MSMg01no262_o03.g1)
ACCAG404861AG404862
length749742
length of high quality
(start - end)		481 (43 - 523)610 (74 - 683)
definitionCHROMAT_FILE: MSMg01no262_o03.b1 PHD_FILE: MSMg01no262_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:38 2005CHROMAT_FILE: MSMg01no262_o03.g1 PHD_FILE: MSMg01no262_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,992,208 - 30,992,684)(30,869,361 - 30,869,970)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTAACGAGAAATCAGCTTTGACAGGAAGATGATCATGCATGTGACCA
AATACTGAGAGAAGCAACTTAGGGGAGGAAAGACTTATTTTGGCTCATGG
GTTCAGCATGTCACATCAGGGAGGGGTCTAGGGCCAAGTTGGTCTGTGGC
TGAGAAGCAGAGAAAGAAGATTCTGGCACTGGTGGGGCCCCAGCCTATGG
GATGGCTGTGCCCACATCTGGGACAGGCCTTCTCTACACATCCAGAGGTG
TGCATACCCAATGTCCTAGATGCAGTCCAAGCAGTTTGACAGTTGAACTT
GACATCATGTCCTGGCACCAATCAGACAATCTGGACAGTCTTCATTTGTG
TTCTTCATTGCTAAGATGACCGCCATGGTTTATTGTATGTTTCAGGACTG
TTTGGCTCTGAAATAAACCCACCTGGTGCTCACTACCTGCCCAGAAGTCT
GTCTCCATTGCCGTGTCTATTGGTGATTGAACTTTAGCGATGAGTAGATT
GTTTTTCACTAGCCTTCAAGTACTTATATATCCTTGTGCTGCACCCTCGT
GCGTCGCTTACACCATTTGTGAGCGTTATCGGTTGGCTTCCTCTATTTTC
TTTCTTTCCCAACTCATTTATCTTCTTCTTCATTTTTCTCGTCCTTCTAC
TCCTTTCCTCTTCTCATCTCTTCTCCCCCCTTACTTTTACCACTCCTCG

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATCAGGATCCCAGGGTTTGGGGCATAC
CTAGTCTCTGGCCTCCTTTAGGTAGCTGCAAAGAGGCCCCACCCCCTCCT
CTTCATTCTTCCTTTGTTCTCTGTCCCCACACCCAGGGACCACAGCAGAG
GCTCTCAACCATCTCTGTCCAGCAAGTCCCAGTCATCATGAGTCTTCAGG
ATTTTGTTTTTTTCCAAGTTAAACCAGAGACTCTGCCTTCTGATATTGAC
TGCCTTCAAAGAAAAGTCATGACGCACAATGCTGAAATATCACTCCTGCA
AGAAGGGTGGGGGTGGTGGAGGCAAGATAAAGAGGCCCAAAGTCTCATCC
TGTTTTTTCTTACACAGGAATAAAAGGACCAAGAAGGCATTCTGAGGAAA
CAGAGACTCTGAGGTTTAATGACCTGCCCAATGCCACACAGTGCCTTATA
TGGTAGAGTGTACTTCTTGCTAGTGACTCACTCAGAAAATAGGTGAGGAC
AGGAAAGGAGTTTGAGCATATTCACTGAGTCGGGGCCGAACCTGTGTTGG
GTTGTCCAAGCTAAAGGTTCAATACCTGCTTCCTGGCTCCGATGCAGGGC
CACTGAATCACAGCCCTAGGGAATAGGGGACAGGTACCCCACAGGCTGTT
CAGAGAAGGTTTCAGCTTACCTGTGTAGGCTTCTGCCACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_o03.b1 MSMg01no262_o03.b1 CHROMAT_FILE:
MSMg01no262_o03.b1 PHD_FILE: MSMg01no262_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:38 2005
         (481 letters)



>mm_chr16_30991874_30992754
          Length = 881

 Score =  899 bits (465), Expect = 0.0
 Identities = 474/477 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattaacgagaaatcagctttgacaggaagatgatcatgcatgtgaccaaatact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gaattcattaacgagaaatcagctttgacaggaagatgatcatgcatgtgaccaaatact 752

                                                                       
Query: 65  gagagaagcaacttaggggaggaaagacttattttggctcatgggttcagcatgtcacat 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 751 gagagaagcaacttaggggaggaaagacttattttggctcatgggttcagcatgacacat 692

                                                                       
Query: 125 cagggaggggtctagggccaagttggtctgtggctgagaagcagagaaagaagattctgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 cagggaggggtctagggccaagttggtctgtggctgagaagcagagaaagaagattctgg 632

                                                                       
Query: 185 cactggtggggccccagcctatgggatggctgtgcccacatctgggacaggccttctcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cactggtggggccccagcctatgggatggctgtgcccacatctgggacaggccttctcta 572

                                                                       
Query: 245 cacatccagaggtgtgcatacccaatgtcctagatgcagtccaagcagtttgacagttga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cacatccagaggtgtgcatacccaatgtcctagatgcagtccaagcagtttgacagttga 512

                                                                       
Query: 305 acttgacatcatgtcctggcaccaatcagacaatctggacagtcttcatttgtgttcttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 acttgacatcatgtcctggcaccaatcagacaatctggacagtcttcatttgtgttcttc 452

                                                                       
Query: 365 attgctaagatgaccgccatggtttattgtatgtttcaggactgtttggctctgaaataa 424
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 attgctaagatgagcgtcatggtttattgtatgtttcaggactgtttggctctgaaataa 392

                                                                    
Query: 425 acccacctggtgctcactacctgcccagaagtctgtctccattgccgtgtctattgg 481
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 acccacctggtgctcactacctgcccagaagtctgtctccattgccgtgtctattgg 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no262_o03.g1 MSMg01no262_o03.g1 CHROMAT_FILE:
MSMg01no262_o03.g1 PHD_FILE: MSMg01no262_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:38 2005
         (610 letters)



>mm_chr16_30869161_30870170
          Length = 1010

 Score = 1118 bits (578), Expect = 0.0
 Identities = 602/610 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcaggatcccagggtttggggcatacctagtctctggcctcctttaggtagctgcaaag 60
           ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcaggagcccagggttcggggcatacctagtctctggcctcctttaggtagctgcaaag 260

                                                                       
Query: 61  aggccccaccccctcctcttcattcttcctttgttctctgtccccacacccagggaccac 120
           ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 aggccccgccccctcctcttcattcttcctttgttctctgtctccacacccagggaccac 320

                                                                       
Query: 121 agcagaggctctcaaccatctctgtccagcaagtcccagtcatcatgagtcttcaggatt 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcagaggctctccaccatctctgtccagcaagtcccagtcatcatgagtcttcaggatt 380

                                                                       
Query: 181 ttgtttttttccaagttaaaccagagactctgccttctgatattgactgccttcaaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtttttttccaagttaaaccagagactctgccttctgatattgactgccttcaaagaa 440

                                                                       
Query: 241 aagtcatgacgcacaatgctgaaatatcactcctgcaagaagggtgggggtggtggaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtcatgacgcacaatgctgaaatatcactcctgcaagaagggtgggggtggtggaggc 500

                                                                       
Query: 301 aagataaagaggcccaaagtctcatcctgttttttcttacacaggaataaaaggaccaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagataaagaggcccaaagtctcatcctgttttttcttacacaggaataaaaggaccaag 560

                                                                       
Query: 361 aaggcattctgaggaaacagagactctgaggtttaatgacctgcccaatgccacacagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggcattctgaggaaacagagactctgaggtttaatgacctgcccaatgccacacagtg 620

                                                                       
Query: 421 ccttatatggtagagtgtacttcttgctagtgactcactcagaaaataggtgaggacagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 ccttatatggtagagtgtacttcttgctagtgactcactcagaaaatagatgaggacagg 680

                                                                       
Query: 481 aaaggagtttgagcatattcactgagtcggggccgaacctgtgttgggttgtccaagcta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaggagtttgagcatattcactgagtcggggccgaacctgtgttgggttgtccaagcta 740

                                                                       
Query: 541 aaggttcaatacctgcttcctggctccgatgcagggccactgaatcacagccctagggaa 600
           ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 741 aaggttcaatacctgcttcctggctccgaggcaggtccactgaatcacagccctagggaa 800

                     
Query: 601 taggggacag 610
           ||||||||||
Sbjct: 801 taggggacag 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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