Query= MSMg01no262_o16.b1 MSMg01no262_o16.b1 CHROMAT_FILE:
MSMg01no262_o16.b1 PHD_FILE: MSMg01no262_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:40 2005
(606 letters)
>mm_chr16_34386254_34387257
Length = 1004
Score = 841 bits (435), Expect = 0.0
Identities = 481/497 (96%), Gaps = 2/497 (0%)
Strand = Plus / Minus
Query: 110 atgggcttttatctcaactagctcactgattggctacatgagctggccatcaagctctga 169
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1004 atgggcttttatctcaactagctcactgattggctacatgagctggccatcatgctctga 945
Query: 170 ggctctccctttctctgtctcccaaatacaggggtcatagatgcacaccatcatgtccat 229
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 944 ggctctccctttctctgtctcccaaatacaggggtcatagatgcacaccttcatgtccgt 885
Query: 230 attttatgtgggtgctggggaatctaaagttacatcctcacctgtgtgcagtaggcactt 289
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 884 attttatgtgggtgctggggaatctaaacttacatcctcacccgtgtgcagtaggcactt 825
Query: 290 tgttcatggagtcacctacctggtgtccttcctctgcagcctccttttcctttgtggtag 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 tgttcatggagtcacctacctggtgtccttcctctgcagcctccttttcctttgtggtag 765
Query: 350 tctggagtcaatgtttaccaaccctcccccccacacacacacacaaaacacctgtgtgct 409
|||||||||| |||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct: 764 tctggagtcactgtttaccaagcc--ccccacacacacacacacaaaacacctgtgtgct 707
Query: 410 ctgtgatcagaaggaagcattccacttgagctcacacgtgggcagggcctgggctgctca 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ctgtgatcagaaggaagcattccacttgagctcacacgtgggcagggcctgggctgctca 647
Query: 470 gtcatgtggagatagtgagcttttttctagggttgctatggtactatggctgtgcatccc 529
|||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||
Sbjct: 646 gtcatgtggagatagtgagcttctttctagggttgctatggtactctggccatgcatccc 587
Query: 530 taggttgctatggtactctggccatgcatccctaggttgctatggtactatggccatgca 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 586 taggttgctatggtactctggccatgcatccctaggttgctatggtactatggccgtgca 527
Query: 590 tccctaggttgctatgg 606
|||||||||| ||||||
Sbjct: 526 tccctaggttactatgg 510
Score = 62.6 bits (32), Expect = 8e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 500 ggttgctatggtactatggctgtgcatcccta 531
||||||||||||||||||||||||||||||||
Sbjct: 264 ggttgctatggtactatggctgtgcatcccta 233
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 2
Length of query: 606
Length of database: 1004
Length adjustment: 10
Effective length of query: 596
Effective length of database: 994
Effective search space: 592424
Effective search space used: 592424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_o16.g1 MSMg01no262_o16.g1 CHROMAT_FILE:
MSMg01no262_o16.g1 PHD_FILE: MSMg01no262_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:40 2005
(542 letters)
>mm_chr16_34245194_34246135
Length = 942
Score = 978 bits (506), Expect = 0.0
Identities = 533/542 (98%)
Strand = Plus / Plus
Query: 1 catcatcccctaaactgaagtttctgttatgccttcttgtgtcgtacccagagccagtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcatcccctaaactgaagtttctgttatgccttcttgtgtcgtacccagagccagtga 260
Query: 61 aggcggcagtctgcgtgtggccatctttctgaggaatggacatggaagtgcccctggttc 120
||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtgacactctgcgtgtggccatctttctgaggaatggacatggaagtgcccctggttc 320
Query: 121 ccacacttgcagcatgacccagcagtctgagtgcataccccagagccccaggttagtggt 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 ccacacttgcagcatgacccagcagtctaagtgcataccccagagccccaggttagtggt 380
Query: 181 tttcatttctctggttctatcccaggtgacaggtaggatcctctttctactgactagaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcatttctctggttctatcccaggtgacaggtaggatcctctttctactgactagaca 440
Query: 241 caagttgttctaaagtcatcagaggacaccaggaagtggaagccagcgagaggcaaaaga 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 caagttgttctaaagtcatcagaggacaccaggaagtggaatccagcgagaggcaaaaga 500
Query: 301 agtgcccttgaatctaagctatggccgtgcaggctggatcgccagagcaaagcagtcctt 360
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 501 agtgcccttgaatctaagctatggccgtgcaggctggattgggagagcaaagcagtcctt 560
Query: 361 tccagggctgcttgtctgggtcacaggattctacttgttgtctaaagggaagatctttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccagggctgcttgtctgggtcacaggattctacttgttgtctaaagggaagatctttct 620
Query: 421 tccagcaaaacagagacagatgaaagcacagcagctgcctttgaagtggagactctggta 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 tccagcaaaacagagacagatgaaagcacagcagctgcctttgaagtggagactctggga 680
Query: 481 actgcagagttcttccctccctgctctgggttcccacctcagccccagatcttttcaggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actgcagagttcttccctccctgctctgggttcccacctcagccccagatcttttcaggt 740
Query: 541 ca 542
||
Sbjct: 741 ca 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
