BAC Information

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BAC

Clone NameMSMg01-263E18
Chromosome16 (Build37)
Map Location 83,246,715 - 83,247,007
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665260
Downstream geneEG545172, LOC100039572, EG621729, LOC640489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263E18.T7 (MSMg01no263_e18.b1)MSMg01-263E18.TJ (MSMg01no263_e18.g1)
ACCAG405160AG405161
length750753
length of high quality
(start - end)		692 (43 - 734)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no263_e18.b1 PHD_FILE: MSMg01no263_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:10 2005CHROMAT_FILE: MSMg01no263_e18.g1 PHD_FILE: MSMg01no263_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATCATCTGATCCAGAGCTACCAAGAGCTGGCTCCCCGAGCCCATCCAG
CGATGAGCACAGGCTCCTTTTCCTAGAGACCTCCGCTAATTGATCTTTCT
TCTTTTCCCTTTTTCCTCTTTTTCTTCTAATCTCTCTCCAGGTATTCCTA
CCTAACCTTAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGTATA
CTTATTTTGTGTACCATATTTCCTCTTTGTTCCTACTCTCTCTCCCCACT
TTACTTCTGATAGCTTGTCCTGAATTTCCTCTAGAATTTTCAGCCCTATC
TTAATCACTTGATAACATGTGAAAAGGAACAAAAGGGCTCCTAACACCAG
AAAAAATTCAAGGCCAAACATTTTCCACTTTACTTCTGATAGACTGTCTT
GAATTTCCTTAGAAAGTTCAAGACCAGACTTACCTCGTAAAGCTGTACTC
ACTGGTACTCTCGTTCCCCAGCTGAAAAGTTCTGAATTCATACAGTTGAA
TCCTTCTTAACAGTCTGCTTTACGGGAACCTTTATTACCGCGACCCGCAG
TTCTGGTTCTGGAATGAGGGATCTTCCTTGCGCCAGTCCCGAGTTTTTTC
TCGTCCCGGAATTCGGCACCAATTGTTATTAGACGCGTTCTCACGACCGG
CCAGGATAGACGCAACAAACCAGAATCTTCTGCGGCAAAGCTTTATTGCT


CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGAATCACAAACTAATAAATTAT
CTTTAAATGACTTTAAAGTGGTTGGCTGGCTTCGGCACAAGAGGAGACCT
TTCTGCTGCAAGTGAGTGTTACCATTAGTTTTCAAATTAAAAGATGCAGG
ACATACATTTTGTACTGATAATGTTTTGAGGGGCTGGGTTTTGATAACAT
TAAACAATAAAGTCTATTTATAACACAAAAACATTAGATATTTTTTCAAA
TTGCAAAAAAACCCCTTCTTCCTCCATGTAACCTCTCTCTTTCTCTCTCT
CTCTCTCTCTCTCTCTTTCTCTCTCTCTCCCTCTCTCTCTGTGTCTCTCT
CTCTCTCTCTCTCTCCCCCCCCNCACACAAAAAAAAAAACATACTCACGC
GGAGGCAATTTAAACATCATTAAAAATATTCTATCATTACTATCAAATAA
AAACGCCTTGATTAATTAGTTGACGCACAGATTTATAGTCCCTATTTTCT
GTTTTTGTTTTGAGAGACAATAGAACTTGAATGTTCTCACAGCTTACCTA
GCTATCCATATCAACTGCTATCCCCCCCATTTTGCCTTTACCACCATTCC
CCTCACTTTCCTTTATCACTCCTTTCCCCCTTGATAGGACGGCCTCTGTT
TTTTTGTTGCACCTTGGCATTTGTATCATTTTTCCCTGTTCTTATTCCCC
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_e18.g1 MSMg01no263_e18.g1 CHROMAT_FILE:
MSMg01no263_e18.g1 PHD_FILE: MSMg01no263_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:10 2005
         (289 letters)



>mm_chr16_83246515_83247207
          Length = 693

 Score =  462 bits (239), Expect = e-135
 Identities = 278/293 (94%), Gaps = 4/293 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaatcacaaactaataaattatctttaaatgactttaaagtggttggctggcttcggc 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ctgaatcacaaactaatgaattatctttaaatgactttaaagtggttggttggcttcggc 260

                                                                       
Query: 61  acaagaggagacctttctgctgcaagtgagtgttaccattagttttcaaattaaaagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaagaggagacctttctgctgcaagtgagtgttaccattagttttcaaattaaaagatg 320

                                                                       
Query: 121 caggacatacattttgtactgataatgttttgaggggctgggttttgataacattaaaca 180
           ||| ||||| |||||||||||||||||||||| ||||||| |||||||||| ||||||||
Sbjct: 321 cagcacatatattttgtactgataatgttttggggggctgagttttgataaaattaaaca 380

                                                                       
Query: 181 ataaagtctatttataacacaaaaacattagata----ttttttcaaattgcaaaaaaac 236
           ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||| 
Sbjct: 381 ataaagtctatttataacacaaaaacattagatagatattttttcaaattgcaaaaaaaa 440

                                                                
Query: 237 cccttcttcctccatgtaacctctctctttctctctctctctctctctctctc 289
           |||||||| |||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 441 cccttctttctccatgtaatctctctctctctctctctctctctctctctctc 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 693
Length adjustment: 9
Effective length of query: 280
Effective length of database: 684
Effective search space:   191520
Effective search space used:   191520
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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