BAC Information

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BAC

Clone NameMSMg01-264F05
Chromosome16 (Build37)
Map Location 16,709,839 - 16,710,127
singlet/doubletsinglet
Overlap gene4933404G15Rik
Upstream genePrkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19
Downstream geneSpag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264F05.T7 (MSMg01no264_f05.b1)MSMg01-264F05.TJ (MSMg01no264_f05.g1)
ACCAG405904AG405905
length741834
length of high quality
(start - end)
615 (45 - 659)293 (127 - 419)
definitionCHROMAT_FILE: MSMg01no264_f05.b1 PHD_FILE: MSMg01no264_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:28 2005CHROMAT_FILE: MSMg01no264_f05.g1 PHD_FILE: MSMg01no264_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGTGTAGACCAGGCTGACCTGGAACTCACAGACATCCTCCTGCC
TCTGCCTCCTGTGACAGCTAGGATCAAAGGTGTGCACCACTACCACCAGG
CATATTATAGGATATCTTTAAAACTAACTTAAACACCCTGTACCTTTTTG
GTCCTTTGTTTTGTCCTTTGGATTTTGGTGTTTATTCTTGGATATTTTCT
TTATTTTTAAAAATTTTTTATTCTTTTCTCAAATATTTATATCCTGACCA
AAGTTCCCTCTCCCTCTATTCCTTCCAGTCTCTTCTCTTCCCTCTCCCCT
ATATCCATCCCTCCTGTTTTCCTTAACCACAAAAAAAAATCAGGTCTCCC
AGGGATGCCAACTGAGTTGGATAACGAGTTACAATGAGGCTGGACACAGA
CCCTCAAACCAAGCCTGGGCAGGCAACCCAGGAAGAAAATGTCCTAAGAG
TCAGAGGCCCTACCTCCTCCCTGAATTATTAGGAATCCCACAAGAACACC
AAGCTACACCAAGAACACTAGTATGTGCAAAGGACCTAGCATAGACCCAT
ATAGGGTTTGTGATTGTCTCTTAAGTCTCTGTGAGCCCCTATGAGCCCTG
CTTATTAGATTCTGTGGGGTGTGTTCTGAGACCTTGANCCCTTTGGTTCC
TATGACTCTGTAGAGGTGTAAGGTAAGCTTTTAGAATAGGN
TATTTTTAATANTNNNAAATAAATATTAGTTTTNTCTTTTTTTTTTTTTA
CTATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCTTCCTAACCTGTGCTCCTT
TTCACCAAAAACTCCTCCTTCCTCTCCCCCTCCATCCTCTGCCCTTGGTC
CATCCACTGCTGTCTGCTTCTGACTCAACTTCCTCAGATATACATAAGCA
GTATTTAGTTGGAAAGCTCGTTCTAGGCTCACAGAAATCTTAAGGTTCGT
GCTCTAAAACTGGGTGCAGCCTGTCAATAGTAGAGTGCCTTTGGAAAGGA
AAGATCAAATATACATGTGAATGTTGTTAGTCATGCCAACTCAGTTTCCT
TGGGACTTCATTCTCTATTGTTTGTTACCCCCCACCCGCATGTTCTGTGT
CTTCTACTTCGAGTGGCAAAGCATAGAAACCTCCTGAAAGGGTGAATAAT
ATGTCTCCTCACCCAATTCCATAGCCTTCTGCTGTTCCTGTTCCTGTTCC
TGTTCGGGGCTATAAGTGCCTCCTGTAGACGGCCCTTGTTAGATGTTAAT
TCAAGGATGGAAAATCCAGGTTACTGTTAGCCTGTGAAATCCTCCAAAAA
GGACAGCACATCCATAGGTGAGAAAACAAAATGAAAAGTTAAATCCCTGT
CCCTTCAATCCCAGCCCTCCTTTTATTACCCCCCTGGAAGCTTTAACCAA
ATTAATTATTAATATCTGTTCTCTGAAACATTAAAATTACATAAAATACA
AAAAATACTCCTTGTGGGGCCAAAACTACAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_f05.g1 MSMg01no264_f05.g1 CHROMAT_FILE:
MSMg01no264_f05.g1 PHD_FILE: MSMg01no264_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:28 2005
         (293 letters)



>mm_chr16_16709639_16710331
          Length = 693

 Score =  513 bits (265), Expect = e-150
 Identities = 283/289 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctcttcctaacctgtgctccttttcaccaaaaactcctccttcctctccccctccatc 60
           |||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 ctctcttcctaacccgtgctccttttcaccaaaaactcctccttcctctttccctccatc 260

                                                                       
Query: 61  ctctgcccttggtccatccactgctgtctgcttctgactcaacttcctcagatatacata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgcccttggtccatccactgctgtctgcttctgactcaacttcctcagatatacata 320

                                                                       
Query: 121 agcagtatttagttggaaagctcgttctaggctcacagaaatcttaaggttcgtgctcta 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 agcagtatttagttggaaagctcgttctaggctcacagaaatctaaaggttcgtgctcta 380

                                                                       
Query: 181 aaactgggtgcagcctgtcaatagtagagtgcctttggaaaggaaagatcaaatatacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaactgggtgcagcctgtcaatagtagagtgcctttggaaaggaaagatcaaatatacat 440

                                                            
Query: 241 gtgaatgttgttagtcatgccaactcagtttccttgggacttcattctc 289
           ||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgaatgttggcagtcatgccaactcagtttccttgggacttcattctc 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)